RiceNCexp:Browse

OSA-LNC112938600

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr4

Start:

19315994

End:

19322331

Strand:

Ref_name:

LOC112938600

Sequence
(XR_003241762.1):

CCUUGCACAGUGUCGUCUUCAAGCUCCCGUCUCUCUCCCGUCCCGUGUCCGUGCCCUGCAGCCGCCGCCUCCUCCAUCAAAUCCGUUGCUCCCCUUCCAUGAUCGCAAAAACGGAUUCCCUACGAUCUCCUCUAUCUUAUCCAAAAAAACCCCCCUAAAUCGCGUGGAAUCGACGCGGUUUCGAGCUGCUAUUUUCCGGUGAACCCUAAGCUAAACCGCCUCCGAUUCCCCUCAAAUCCGCACCGAUCUCUCCCCUCCUCCGAUUCUCUUUCCCCUCCUUUGCUCGAGCUCCCGUGCCCUAGCCGCCGCCUCUCCCCGCGCUAGCCAUUUCUCUCUUGCCGCCGGCGGUCGCUCCUGCCGCCCCUAGCCGCCGCCUCGGCCGACGUACUCCUGCGGCGCCACCUCCCACGGCUCCGCAAGGCCGAGCUCUACCUCGUCCACCCGUUCUUUUGCGCCGGAAGCCGCCGUCACCGUGAAGGCCGAGCCGUCGCCGUGUUUUGAUCUCCGGCGAAGCCUUGCCGCCCCUCCCGUCGUCGCCAGGCUUUGCCGUCUCCUCCGUUGGCUUCGCGAGGACCCGUAGAAGGCCGUUCACCUUUUCUCCUCCGCCGGAGUCCGCCGGAACACCGCCGUCGCCGUCGUCCCGAUCUCGCCGCCGCUCGAAGCUCGUCGCCGGCCAUCUCCCGUUGACGUUCGUCGUCGUGCCGCCCCUCGGUGAGCUCUCCUCAUCGUGCUCUUUCUUCCGGUGCCCUCGGUUUGCGCUGCCGUGCCCUAGAUCGCCGGCGAUUAGCCACUCGUCGGUGAUGACGUCAGCGCUUGUUUUCCUUUUCUAAAAUAAAUAGUAAACCCAUUUCUGUACAAGGCUAAAAUCAGAUUAAUCUUGUAAAAUUCAUAACUAAAUCAUAUGAAGUCGGAAUGAGGCCGUUCAAGUCUCUAAAUUCAUCUAAAAUCAUUAUCUACAUGUUUGUUUACUUUUUAUGUACCGUUUAUUUGGAGUUUCUUAGUUUUUUCCUCAUUUUGCGUGUUAGUUGUUGUUUUCGUCGUUUUGGAGGUUUGUGAGUGCGUCGGAAGUGGUUCAGAAGACUAAUUGAAGACCGACUAUUGCAAGUCAAGUCACACAGAUCCCAAACACAAUUCCUUUGAGCAUAUUGAAAUUACACCUACCAGUAGAAGAAUUUGGUUGCCCUUAAGAUUGACCUUAUCAUGUUGGAAACUGACGAUAGACCUCUUGAGAUGGUUUAGGGUUAAGCUAGCCCAGUUGGUUCUCUUUAUAUCUGGUAUAUUUAUGAGUAGAUUUACGUAAUCUGAAUGGACUAAUCUCUCAGUUGUAGGACAUAGGAUCAGUAUAUAGCACAAACUGCCUUUUAAAGUGAUCGUCACAAGAUUUGUUAAAUUCAAGAAUCCCGCAAGGCUGACAGAGUUAUCUUAGUCCCCAUUUUGUCUUUAUAUAAUGCAAACAGAGCGGCCUUUGUUGCCUGUAGAGCUUUGUUUUUAUCUUUGUCCUUCGGGGCAUCAACGUCAGCUUGGAUUGCUUGUGAGACUUCAACCAGUUCAACACCUUUUGAUGGCACGCCGAGUAUGUGAUCCACAUCUUCAAUGGUUAUCUCCAGCAUGGUUCCAUUUAUAUUGAAAGCUCUAGUCUACUCAUCAUCCUGCCUAGCAAUUUGUUUGAAUAAAAGCCGGUGAAUCUGGACUCCAUUCAUUUUUGUUAAGCCCCCAAAACCUAGAUAGCGAUCAUUAAGUCGAAAGAAUAGUUGCUUACUGGUUUGUUGGCUCGAAUAUUAUUCUUAGUCAUUCUCGGUGGCGGCUCACAGUUGGGUAUCAUCGAGGAUUAUAUUCUGUGAUGCGUUUGGAAUAAUUAAAUCAUUUAAAAACAUUUAAACAGUAAUGCAUGCGUUAAUACAAUGGUAAUUAAGAGAUGAAGUGUGACGGUUGCUGAUGAGCCAUUACUUCAGCAACUACGAAAAUUCAAAAUCUAAAAUAAGACUAGGUGUUUACUUUUUAUCUACGAAAAUUCAAAAGCUUAGAACAGGGAUUGGUCUGGAGAAUUAAUUCGGUCGUAUAUUAACAGUGGUUUAAUUUCUAGUUUGUUGAGUACAACACGCCACGAAUUGUAAAUAAUUACAGCCACAGCAACCAUCUACCUCGUGUAAUUUGUGUGAAUGUAAUUAGCAUAAAUAAAUAACUAGGUGAUGUUUCCUGGACACUUCCUGUGGUGUAUAUAUAUAUAUAUGUAGUACAUCGUCAUUUAACUUGAUCCAUUUCCAUGCACGCGAAUGACACACAAUUCCGUCCAACCAUGUGAUUAACUUCCUGUGGUUGGACGAACUUGUGUCAUUCGCGUCCUGGAAAUGGAUCAAGUUAAGUGACGAUGUACUACAUAUAUAUACACCACAUGAAGUGUCCAGGAAACAUCACCUAAUUAUUUAGGUAUGCUAAUUACAUUCACACAAAUUACACGAGGUAGAUGAUUGCUGUGGCUGUAAUUCGUGUUGUACACAACAAACUAGAAAUUAAACCACUCUUAAUAUACGACCGAAUUAAUUCUCUGGACCAGUCCCAGUCCCGGUUCUACGCUUUUGAAUUUUCGUAGUUAGAAAGUAAACCCCUGGUCUCAUUUUAGAGUUUGAAUUUUCGUAGUUGCUGAAGUAAUGGCUCAUCAGCAAGCACCACACUUCAUCUCUUAAUUUCCAUUGUAUUAACGCAUGCAUUACUGUUUAAAUUUUUUUAAAUGAUUUAAUUAUUCCAAUCGCAUCACAGAAUAUAAUCCUCGAUGAUAUGCCCAACUAUGAGCCACCACCGAGAAUGACUAUGAAUAAUAUUCGAGCCAACAAACCGGUAAGCAAGUAUUCUUUUGACUUUACGAUCACUCUCUAUGCAAUAAUGAACUAAAUUGUGAUGUUUAUUAUCGCAGGGAACGCAAGUAUGUUCACAAGUAGCCUACUAGAAAUUCAUACAGACUCUAGACAAAGAACAGAUGCAAGCCAUAGAUGAUCUAGGUUUUGCCGGCUUAACAAAAAUGAAUGGAGUCCAGAUUCGCCAACUUUUAUGCAAGCAAAUUGCUAGGCAUGAUGAUGAGCAGUCUAGAGCUUUCAAUAUAAAUGGAAUCAUGCUAGAGACAAACCAUUGAAGAUGUGGAUCACAUGCUCAGCGUGCCAUCAAAAGGUGUUGAACUGGUUGAAGUCCCACAAGCAAUCCAAGUUGACAUUGAUGCCCCAAAGGACAGAUAAAAACGAAGCUCUACAGGCAACAAAGGCCGCUAUGUUUGCAUUAUAUAAAGACAAAAGGGGGACUAAGAUAACUCUGUCAGCCUUGCGGGAUUCAUUGAAUUUGAACAGAUCUUCUGAUGAUCACUUUAAAAGGCAGUUUGUGCUAUAUACUGAUCCUAUGUCCUACAACUGAGAGAUUCGUCCAUUCAAAUUACCUAAAUCUACUCAUAAAUAUACUAGAUAUAAAGAGAACCAACUAGGCUAGCUUAACCCUAAACUAUCUCAAGAGGUCUAUCGUCAGUUUCCAACAUGAUAAGGUCAAUCUUAAGAGCAACCAAAUUCUUCUACGUGUAAUUUUAAUUCCAGAUAUGGUUUAAGUUUGUAUGAUGUGACUACAUAUUUUUUUUAAAAAAAUUCUUGCAGCUUUGGUACUGGGAGAAGUUUCGAGUGAGUCAUAUAGAUCCUUCCACCGCACGUGUCAGACCACUGAUACAAUACUGGGAUGAGAAGAAGGCUAGAAAGCGUGAAAAAAUCAUGUAUGGAGUAAUUCGUGUCCUAGCACCGGGAAACAGGCACGAAACUGUCAUUAGUGGUCUUCAUGUGGUCUCUUCAUGCUGAAGUGUAUGGAACACUGGAAUGGAUCAAAGUUAACCACAAAAUUUAAGCAGAUCUUCAAACGCAAGUUAGCGGCCAUUUUGGUUGGCUCCGCAUCGAAUGAUAACACUGAAAUCCCAACAUACAAGAAAUAGGCAGGUGGCGACAAGGGUGUUUGGCCGGGAGAAUAAUAACAACAGGAUUUACAAAUAACUGCAUCUAAAUAUUUCAGACAUAUUCUUAUUUUUCUAAUUUAAACAAAUUAUGGAUAUUAGUAUAUUCACUGUACUUGGCUCAAUUUUGAUUAAUAUUUUGGUGUGUUGGAGAAAAUAUUAGUUAGGUGACAAUUAGUAUUCACGGCUUGUAUGUAUUGAUGACAAGAACGUGCUUAACUCCUGCACUAUAUUACUGUUCAAUGUUCAGAAUCACGAUGAGUGAUCUCAGGAUAUUAUGUUUUCAGGCUACAUUGUUGAGUAGAAUGUACCGUAAAAGUCUUCUUCUAGUAUUAGGGGAUUUGAUGGAAGUAGAGAUAGAGAACUCGAGAAGUUUGGGUGUAGGGUUUGAUACUCAAAAGCCACGUUUAUACAAAACAAGCCUAAUGGACCUUGGCCUGCUUCCUGUCAAAAAUUUUGUCAAUUUGACCCUUUACAAAAAGUAAUUUCGCAGAUGAACCGUGGCAAAAACUUAUUUCAAAAAUAAACCGGUGGCUCAGCGCCAAAUAACCUGGCGCUGAACUUGCACAGGUCGGUGCCAGGUCAACUGGCGCGGAAUGCCUUGCCACCGUGGAUUCGAGGCUGACUCGGUGAUUCGACGUGUCAAAGGUCAGUGCCACUCGACUCGCCGCUGAGGUGCCAGGAUUCAGCGCCAGGCGGUUUGGCGCUGACCUUCGAGUCUUUUAGGCCCACACGCCCCGGCCAAGAGAGGCAACCUCUCUCAUUUCUCUUCCUCUUGCGACGCACACAGCGACAAUGACAGCGCCUAUCCCCUGCAAGCCCUAAUACUCCUCGAUUCCUUGGGGAAUCAAGGGGAUUGGGAGGGGAUUAGUGGUGGAUAUUGUGGUGUAAGGUAAUGCCCUCGAAACCAUCCAAAACUUUUUGCAUUUUGUGAUUUGGUUUGGUGAAGAAAGAGGGUUUGAAAGGAUGAGGGUUGAAUUGAUUUAUCGGUUAAUUGAGUGGGAGAGGGUAAUUUAGAGGGGAAUAGGAUUGAUUGGUAAUGAAGCCUAGUUGGAAUGAGGGAUUUGGUAGGUUGCAAUGGGUGGUUUGGUUAGGGUUUUGGUUAGAAGUUUUGGUUAGGGUUUGGUAAGGGUUGUUGUUAAGAUUGACAUGUAGUUCAUAGAGAAUGGAAUGAAUGUGAUGUACGGCUAAGACUUGUUCUCUAGUUAACUACUGCUACAUGGUUUGCUUUGUUCUGACUUUUACAUCGCAACAUUGCUUUGGUUGCACACUGGUUAUGAACUGAAUGAUUGAUUACUUAAUGUUGUGUUCACUUCAACUCCAAAUUUGUCUGAAAGAAAUAAGUUUUAUCCUAUUAUGCACAGCUCAACGCCAAAUAACCUGGCACGGACAGUGCCGACUUCAGCACCAACAUAUUUGGCACUGAGCUCUGGCACUACACCAAGCCAUACCUAACUGCUUGACUAAGUUAGCCAGUACAGCGCCAAACAACUCGGCGCUGACCUUAGCCAUCUCAGCGCCGAGUCAGGUGGCGCUGAGCUUUGUCACGUUGGCACGCCGAGUCGGCCUCCCAUCCACGGUGGCACGACAUUCAGCAUCGGCGCAGAGGCGAAUGGCGCACGCAACUCCUCGCGCCCUUGCAUGUCGGCCAGUCGCUCAUCUGAUGCAGAGUGUCUUCGCGCUCUCUGCGGCUCAGCGUCCUGCCCGGAGAAAACCGCGGGGCUGGGGGGUUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

364

LEP:

73.98%

ME_num:

127

MEP:

25.81%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

shoot

Tau :

0.88

Avg Expression:

1.48

Tip: OSA-LNC112938600 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-1.90819295178006	0.0327324443378271
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-1.99746133308274	0.0193423177695741
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-3.90421322637368	0.000730264330357321
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-2.40352831585726	0.022928959362267
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-3.34133730045442	0.00888281247423688
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-2.78524829847277	0.00201562048763963
7	Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated	-2.08543104630663	7.8718488097884e-13
8	Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"	-1.40388572339875	0.040208464486587
9	BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs	2.44953747486574	0.00013754169114591
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-3.43610421977079	0.00116783639535226
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-3.76049544807711	0.000387607731438338
12	Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day	1.47230564089381	0.011019885926476
13	Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated	-1.43124719241636	0.0016254690929756
14	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-2.93744395719734	0.00713609326894124
15	Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day	1.05456686143072	0.000107189857171924
16	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-3.57301785978198	0.00011843519928901