Chr:
Chr4
Start:
15453313
End:
15456578
Strand:
-
Ref_name:
LOC112938592
Sequence
(XR_003241747.1):
UUCUCUCCCCCUUUCCUCCUUCCCCACCGUCGCUGCCGUCCUCCCCGGCACUCCCAAUCCCUUUCUCCUCCAUGCCGCACCGCCUCCCCAUCGUCGCAGCCGCCCCGUCGCCCCUGCUCGCCUGCAUCCACCACACCGCCUCCCUCCCCAGUCGAGACGGCGUCGCCUCCUCGCCCCCUUCGCAGCCAGAUUGACACCGCGCCGUUCAAUCCACCGCCUCAAGCACCAUGCAUCGUCGUCGUUGCAGGCGUCAGCACGGGCGCGGGCGCUGCCGAUCCCGAGUCGAGACGACGUCGUCCGCUGCUGCUUCUCCACCACUGACGGUUGCCCUGCGUAUAUCCUCCCUAUUAUCGCGGUCCCCACCUGCUCCUGAAUCCUGAUCCACAAAAACAGCGGAGCGCCGUCGGCCUCUCUGCCUCCCUGCGACCACCAGUGGCAUCUGCCCCGCCGUCGGCUCUCCCUCACCCGCGACUCGCCGACGAUGGUGCUCCACAAACCAUUCAGGCCGUCACUGGUCUCCGGAGCGCCCGAGGCCGACGUGUCUCGCACUCCCUAUAAUCUUGCUUUGCUGUAGCAGUAACAACAUCAUAACAUAUCGUGGUUCAUACAAUGGAUCAGGCUGGUAAUUCGAUUCCAAUUCUUGCUCCUGAACUUUUUUAUUGGUGAUAAUGUUCAGCAGAUUGGUUUGGUGGUGGCAGUGCGGCACCACUGAUUUGUGUUAGACAUUGGUCCUUAUCCAACCCUCUAAUCUCUUGAUUAUGCUCACUUACGAUGACUUCAGCUCAGGUGGUUGAAAGAAACACUCCUAGACUGCUAUUUAUUUUUACGUUACAGGGAUUUGGCUACAGAUAGUUGCAAGCUGCAAUGUUCUGAUAUUUGUUAUGUUUUAGAGCAAAAUCUGCCUUAUAUAUAAUGUUAUAAUUAGGCUUCGAAUUUCUUGCUUAUGUUCUUUAAAAAUUCCAAGUAACCUUUUCAGUUCUUUAUGUCAGGUUAAUUGACAGAUCGAGUUGCACUUACACAUAUCUUGUUUUAGGAAAUGCUCCAAUGGCCCUUGAAUCCAGCAAAAUUGGUAGUUCCUCUCGUCCUCCAGGCACCAGCUAUGGACAAUAUCUAUACCUCAAGGAAGCCUCUUCAUGUUCCCCUCAAUAUUUCUUUCUGGGUGCAUGCACUCUAUGCUUGCUAUGCAAAACCCAAUGUAUGUGAAUGUGAUCCUUAUGCUGCAAAGCUGAUGAAGACAAGGUGCUCGAUAUUCAGACGAUAUUGGUCAAGUAUAACAUAUUUCAUAUUGACCAGUGAGAAGCAUCCGAAAGAAGUAAACGAAUGAGCAUUGAGUUCCAGAAAAUGGUGUAUAGUAUAGAUGGAAUUAUGAAAAGCAUCUCU
Sequence
(XR_003241748.1):
CCGUUCUCUCCCCCUUUCCUCCUUCCCCACCGUCGCUGCCGUCCUCCCCGGCACUCCCAAUCCCUUUCUCCUCCAUGCCGCACCGCCUCCCCAUCGUCGCAGCCGCCCCGUCGCCCCUGCUCGCCUGCAUCCACCACACCGCCUCCCUCCCCAGUCGAGACGGCGUCGCCUCCUCGCCCCCUUCGCAGCCAGAUUGACACCGCGCCGUUCAAUCCACCGCCUCAAGCACCAUGCAUCGUCGUCGUUGCAGGCGUCAGCACGGGCGCGGGCGCUGCCGAUCCCGAGUCGAGACGACGUCGUCCGCUGCUGCUUCUCCACCACUGACGGUUGCCCUGCGUAUAUCCUCCCUAUUAUCGCGGUCCCCACCUGCUCCUGAAUCCUGAUCCACAAAAACAGCGGAGCGCCGUCGGCCUCUCUGCCUCCCUGCGACCACCAGUGGCAUCUGCCCCGCCGUCGGCUCUCCCUCACCCGCGACUCGCCGACGAUGGUGCUCCACAAACCAUUCAGGCCGUCACUGGUCUCCGGAGCGCCCGAGGCCGACGUGUCUCGCACUCCCUAUAAUCUUGCUUUGCUGUAGCAGUAACAACAUCAUAACAUAUCGUGGUUCAUACAAUGGAUCAGGCUGGUAAUUCGAUUCCAAUUCUUGCUCCUGAACUUUUUUAUUGGUGAUAAUGUUCAGCAGAUUGGUUUGGUGGUGGCAGUGCGGCACCACUGAUUUGUGUUAGACAUUGGUCCUUAUCCAACCCUCUAAUCUCUUGAUUAUGCUCACUUACGAUGACUUCAGCUCAGGUGGUUGAAAGAAACACUCCUAGACUGCUAUUUAUUUUUACGUUACAGGGAUUUGGCUACAGAUAGUUGCAAGCUGCAAUGUUCUGAUAUUUGUUAUGUUUUAGAGCAAAAUCUGCCUUAUAUAUAAUGUUAUAAUUAGGCUUCGAAUUUCUUGCUUAUGUUCUUUAAAAAUUCCAAGUAACCUUUUCAGUUCUUUAUGUCAGGUUAAUUGACAGAUCGAGUUGCACUUACACAUAUCUUGUUUUAGGAAAUGCUCCAAUGGCCCUUGAAUCCAGCAAAAUUGGUAGUUCCUCUCGUCCUCCAGGCACCAGCUAUGGACAAUAUCUAUACCUCAAGGAAGCCUCUUCAUGUUCCCCUCAAUAUUUCUUUCUGGGUGCAUGCACUCUAUGCUUGCUAUGCAAAACCCAAUGUAUGUGAAUGUGAUCCUUAUGCUGCAAAGCUUAACCAUCUCAAUAAAGCUGAUGAAGACAAGGUGCUCGAUAUUCAGACGAUAUUGGUCAAGUAUAACAUAUUUCAUAUUGACCAGUGAGAAGCAUCCGAAAGAAGUAAACGAAUGAGCAUUGAGUUCCAGAAAAUGGUGUAUAGUAUAGAUGGAAUUAUGAAAAGCAUCUCU
Sequence
(XR_003241749.1):
CGAUCCGUUCUCUCCCCCUUUCCUCCUUCCCCACCGUCGCUGCCGUCCUCCCCGGCACUCCCAAUCCCUUUCUCCUCCAUGCCGCACCGCCUCCCCAUCGUCGCAGCCGCCCCGUCGCCCCUGCUCGCCUGCAUCCACCACACCGCCUCCCUCCCCAGUCGAGACGGCGUCGCCUCCUCGCCCCCUUCGCAGCCAGAUUGACACCGCGCCGUUCAAUCCACCGCCUCAAGCACCAUGCAUCGUCGUCGUUGCAGGCGUCAGCACGGGCGCGGGCGCUGCCGAUCCCGAGUCGAGACGACGUCGUCCGCUGCUGCUUCUCCACCACUGACGGUUGCCCUGCGUAUAUCCUCCCUAUUAUCGCGGUCCCCACCUGCUCCUGAAUCCUGAUCCACAAAAACAGCGGAGCGCCGUCGGCCUCUCUGCCUCCCUGCGACCACCAGUGGCAUCUGCCCCGCCGUCGGCUCUCCCUCACCCGCGACUCGCCGACGAUGGUGCUCCACAAACCAUUCAGGCCGUCACUGGUCUCCGGAGCGCCCGAGGCCGACGUGUCUCGCACUCCCUAUAAUCUUGCUUUGCUGUAGCAGUAACAACAUCAUAACAUAUCGUGGUUCAUACAAUGGAUCAGGCUGGUAAUUCGAUUCCAAUUCUUGCUCCUGAACUUUUUUAUUGGUGAUAAUGUUCAGCAGAUUGGUUUGGUGGUGGCAGUGCGGCACCACUGAUUUGUGUUAGACAUUGGUCCUUAUCCAACCCUCUAAUCUCUUGAUUAUGCUCACUUACGAUGACUUCAGCUCAGGUUAAUUGACAGAUCGAGUUGCACUUACACAUAUCUUGUUUUAGGAAAUGCUCCAAUGGCCCUUGAAUCCAGCAAAAUUGGUAGUUCCUCUCGUCCUCCAGGCACCAGCUAUGGACAAUAUCUAUACCUCAAGGAAGCCUCUUCAUGUUCCCCUCAAUAUUUCUUUCUGGGUGCAUGCACUCUAUGCUUGCUAUGCAAAACCCAAUGUAUGUGAAUGUGAUCCUUAUGCUGCAAAGCUGAUGAAGACAAGGUGCUCGAUAUUCAGACGAUAUUGGUCAAGUAUAACAUAUUUCAUAUUGACCAGUGAGAAGCAUCCGAAAGAAGUAAACGAAUGAGCAUUGAGUUCCAGAAAAUGGUGUAUAGUAUAGAUGGAAUUAUGAAAAGCAUCUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.3%
ME_num:
MEP:
48.17%
HE_num:
HEP:
45.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.78
Avg Expression:
29.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 9.94664866225665 | 2.72082182344153e-08 |
| 2 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift | 5.53853155977498 | 0.00464185089612652 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 5.8085282730694 | 6.34510355267462e-09 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.6232097901304 | 0.00613670476759424 |