Chr:
Chr4
Start:
32183375
End:
32187370
Strand:
+
Ref_name:
LOC112938591
Sequence
(XR_003241743.1):
UCCGCGUGGAGUUCAGACGACGGAGAAGAGGGCACCGACCACCGAGCCGGCAGCGGGCGGCGCCAACCGGGAAGGCGGUUCGUCCGCCACCGCGAGCGCGCGAGGUGGCGCGGCGGCGGCGUCAGCGCCGGUGUUGCCAGGCGAGAGAGCUAGUGGUUCCGCGUGUCCGGGGAGCAGACGUAUCACGGAUUCACCACAUCGUGGCAGGGCAGUCCUUCGGUGCUGCGGGAGCACUUUGGUUUGGAGACCUUCCGCCAAACGAAGAUGGACUUUCAGAGACCUGAACAAGCAUAGCAGAAUGACAUUUAUCGUCAUGUUCAUGGAGAAUGUGGGGCAAUUGCUAGAGAAAACAUCAUGAGACGGCGCAUACCUGCAGGAGAGCCGGCGAGUCGAAGGUACAGGUUCUCACCAACGGCACUGGCUUUCUCCGAGUCGAGAAGCUCCCCCAUCCAUACCAAGCACCUUGAGGGGUCACCCGUCGUGAGGAUAGUUCUCAAGUUGGCAUAAGCGUAUGCCGUGCACGAGCAGUUGCGGUCGCACUCAUCGGCACACUCCUCAAAGGUUCUGUUCCUGAUGUACAAGAACUUGUCCGGCACCUUCAUCCCUGGUAAGGUGAAGAAAUGGUCUUGGCCACCGCAUCUCAGCUCCUCCUUUCUUCGGCAUCCUCUGGAAGAGUUGAGGCUAAAUCCAUCGGCCGGCUCGAAGCCAUCAAGGCACUUGCACUCCUGGAAGCUGCCGGUGAUGUCGCAGUAGCCGAACGGCCCGCAGGCGCCGUAGUGGAGACAGCCAUGGCCUGGUCGCUCGAAUGGGCUCGUCCAAGUCGAUGAUACGUUGUUCCAUGCCCGGAAGCUCACGUUCCCGGUGUAGUCCAGCUUCCAGUGUGUCAAAAUGCCAUCAGCUGCGUUGUAUAUCGCGUAGAUCUCCUCGCCAUUGUCAACGAUCUGGGACCAUAUGUACCUGGUGAGGCCGGUGGCCGUCGCGCCGUUCCAGACACCGCUGCGCCACGACGGGCUCGCCCCAUGCCAGAUGACGAUAUGGAGCCCCCACUGGUCAGGGUCACCGCUGAGGGAGAACUCGCAGGUGGACGGGUCGCGACGACCCCUCCAAGCAACUACGCGCACCGCCUCAUGGUUCUUGUAUGUUCGUCCAUAGCUUGAAGCCAGGGAGGCCAGGGAGGAUCGUGUCCGUGGGGUGAUCGGGCAACCGGAGCACGAAGUUGCCCGUGUUCUGCAGCACCGCGGUGGCUCCACCACCUCCGAUGGUGACCGUGUUCGCCGUGGUCCCCUUGGAGUCGGAUAGCACAAGCCCGGAGGUGUUGGUAACAGCCAGCCUCGCCGUAUGGGUGGUGAUUGGGUUGUCGCGGUUGGCGACCCAGACAUAGGUGCGCUCCGGGAUGUUGUUGUACCAUAUGCCAAGGUAGAGCAGGCUUGGGGUUGAGUUGGUGGUGGUCAGGGAGAAGAAGCCGACAGCAAAGACGCCGCCAUCCGAGAUGAGCUUGUCGCCGCCGGGGAAGAUGAGUGGCUUUGCCGGUGUUAGGCGGUCAUCGGAUUGGCAGAAACUAAUCAAGAACAUGAAGAUGACUACAUGCAGUCUGGUCAUAUUCUCUUGUAAAUUCCUUGGAAAGCACUACAAUCCUACAUAGAGACGAUAGAACAGAGUUGUGAGAUUAUUGGGCCAACCUUCUUGUCGGCAGUAUAGAGUAACUAGUGCAGCUAGCUUCGUAAAAGAGUAGGAUUAUACUAUCGUAAUUGUUAUAUUUCCCAGGCCCUGAAAUAGCGCAAUAGAUAUUCUGUAUUCCUGUGUUGAGAGUGAGAAAAUUGGGAUUAUACUACCGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
37.6%
ME_num:
MEP:
45.73%
HE_num:
HEP:
16.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.78
Avg Expression:
14.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.64879372889136 | 0.00852656851221338 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.44510978286304 | 0.0110901488122387 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.82467571837179 | 0.0217367589381883 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.89220737058841 | 0.000723298470738031 |
| 5 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.93804064054549 | 0.022965447536044 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.89696409082531 | 5.07381386198041e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.48660831811503 | 0.0131111620508667 |