Chr:
Chr4
Start:
30718983
End:
30721877
Strand:
+
Ref_name:
LOC112938586
Sequence
(XR_003241734.1):
AUACAUAUAUAUAUACAUACAUACAUACAUACAUACAUACAUACAUACAUACAUACAUACAUACAUACAUAUACAUACAUACAUACAUACAUACAUAUAUGUAUGUAUGUAUGUAUUCUAUUGGGCAUUAUGCUUUUGGACAGCAAAAGAUUGAUGAUUUAUUGUUAUUUUUUGGGUAGCUUUACUCUGAUAAUGCAUUGCUAAAGUGCUGAUGGUUAGUUUGCAUGCAGCCGCAAACAACCAUAUCAAAGAGAGCGAUAUAAUGUUACUGACGAGUGUUAUAGAAAGGUAGCCUGGCAUAUUCUACAUUAGUAGGUCUUGUGAGUUGCUUUUUCUUGUUCAAUGAAAAGAAAUCUUACGACAUAUACUACCUCUAUUUUUUUAUUUGAAGUUGAUUAAUUCAAAAUAAAACUAAAUCAGAAAAAAGCCACGAGGAAAUUAGCCAUGCAACUACAUACAUGGUAAAUCAAAUCGGUCCGCUAACGAAGAUUUAAUUUAGGAGUUGGAGCUCUAUAAAACAUGCCGUAAGGCUUUGAGCUACUUGGCAAGUUAUUCAGUGCAUAUAAAGCAUUAUGUACUGGCUAUUGCUACCAUAUAUCAUGUGUGACAGGUGGGACCAAAUAUUAUUUAUAUCUUAUAUAUUUAUAGUUAACUAUUGUAUGUUUCAAUUGACUAUAAAUGAUUUGGAGCUAGGUAGCUAUACUAUUCAACUUGCUCUUAGUAGAGAUUAAUGUUGAAAAAUUAAAGACUUUGGCCCUUUAUUAAAUGAGGUAUUGGAUAGUAAUAAAAGGACAAUUGGGGUAAGAUAGAGAAAAAAAAUAGUACUUCCUCCGUCCCACAAUACUUGUCUUUCUAGCAUUCAAAAGUUGUCGCAAAAUAGUUAUCACUUGGAAGUACUACUUAUCACAUCAACCACUUUCAAUUCAAAUAUCUUCUCAUUCUACCCUCAACCACCAUCUCACAUACAACUAUACAUUAUUAUCUCCGUUUCAGGUUAUAAGACUUUCUAUCAUUGCCCAUAUUCAUAUAGAUGUUAAUGAAUCUAGGCAUCAUACAUAUCUAGAUUCAUUAAUAUAUAUAUAUGAACGUGGGCAAUGCUAGAAAGUCUUAUAAUAUGAAAUAGAUAAAGUAUUUAUUAAGAGAUAUUAUAGUUUUUUUCUCUUAACCUUAGUACAUGCUAAACAACCUAAAAUGACAUGUAUUAUAAGACGGAGGCAGGAUUACUACUCCAUAAGUAAAGUGAUUGAUGGGACAAUCAGUAUUAUAAAAUAUUUAUAUUUGUAGAUAAAUUUUAAAUGUUUUAAGUACUUAUAUUUAUAUUUUAUAUUUAUAUUUGUGGAUAGAGGUAGUACCUGAUUUGCACAUGUCUGGUUCCCUGUAUAGUUUGCUCGGGCCUCGGGAAGACAUGCUGAGUGCCUAAGAACAGGACAUUGCUCCUUUGCAGCUGAUGCACAUUGCACAGCUAGGCGCGGCCGCGCGGAUACCGUUCUGCCCUGCACCACUAGGCCGGCCGGCAACAUGUUCUUCGUUUCUGUGAUCGUCGGGACUCGAGAAUUGGAUUCUCCCUCACAUUAGGCGGACGAACAAGCCAUCCCGUCCAUCCAAAUCGCUGGAUGCGACGCUGCUUGACCUUCUCGUCAUCAUUCAUCAGUGGGCUGUCUAAAGCGGUUUUCUUCGUGGAGGGCUUUCCCGGUGCUGGCUGCCUUUACCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.42%
ME_num:
MEP:
65.85%
HE_num:
HEP:
7.52%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.74
Avg Expression:
4.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.8889157433382 | 1.24522350316146e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.44957303395119 | 1.46580390721621e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.33748662454468 | 0.00266697316446556 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.69477342908769 | 0.000136184466817215 |
| 5 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.25092944031081 | 0.0445912836970459 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.18191912390445 | 4.51795660763489e-07 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.44342081109692 | 0.019511537753996 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.62921953785398 | 0.000162471899852703 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.60800206958637 | 3.30146623015404e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.32078673816048 | 4.98352956738616e-08 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.59439816997604 | 0.000553712554321268 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.23696529643513 | 0.0210298685103256 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.83079187420817 | 8.71387936461953e-15 |
| 14 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.03710140969172 | 0.00216968224810851 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.4226598547613 | 3.55987582887279e-09 |