Chr:
Chr4
Start:
32031522
End:
32032639
Strand:
+
Ref_name:
LOC112938576
Sequence
(XR_003241710.1):
GAAUGUUAGAUAGAUCUCUCUCCCCUUGAGCCCAACGGCUCAAGAGGGCCUUGACCGCGCCCUGAUCGGGGGCGCCCAGCCCAAUGGCUGGUGGGCCCCCGUCACACUGCGCCAUAUAAAAGAGGGGUGGAGGCCGGCACGGCACAUGGUACGAGAUUCACCGCCGCCGCCAACUCCACCCUACAAACCCUAAUCCGAUCGAGAGGGGGCGCAGCCAGUGACGGGAAGCGCCACCGCCGCGCCAGACCUCAUCGCCGGGACAUCUACGACCGUCACUCCCGCAGCCGUCAUCGCCGUCGACCUCACCGGCGCCGCAUCCACGACAACCGAGCGCCAACGACGACGAUGGCCGGCACUUCUUCAUCCUCCAACACCUCAACCGAUUCUCCUCAAGGACUGCGACAAGAUUGAAGCUCAUGCUUAGCAGGAAAACCAUUUUUUUUUUACGGAAAGCAGGAAAACCAUUUGAAAUACCUAUGGAAAUAUCCCUACACAUGUGUUAACCAUGAUGAUCUUUUUCUUUUCGAAAUACUGUAAGGCAGGUAUAUCCAUCAUCUUUGUCAUCUACAACUGCCUUAGCUAUACAAAUAUUCAACUCUCAAAGUAGUUUGGUAGCUAAUUAAUCAGACAGGUGAUGUAAAUGUAUACAUCGUCCAUUGAUUCACAGUGGAUACUCAGUUGUUGCAUUUAAAUGUCUCUUUUCAGGAACCAUAAGUUCAUUUACAUGGCUAUUUUAAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.24%
ME_num:
MEP:
59.96%
HE_num:
HEP:
24.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.87
Avg Expression:
30.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.80227010628946 | 2.46555582820413e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.69864676115643 | 6.47968333704263e-23 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.25928337713538 | 7.34295495769964e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.6060722562926 | 2.75068635978423e-16 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.37508762270194 | 3.72206716613896e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.47983622791324 | 4.06739487487849e-16 |
| 7 | Azucena // root // control--/--Azucena // root // Al | 1.49113181503558 | 0.0432543745632136 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.24926092097777 | 6.44202804382089e-35 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.37234168202908 | 3.77036308381501e-08 |
| 10 | 9311 // leaf // control--/--9311 // leaf // salt | 2.12083688686215 | 2.15768560583951e-06 |
| 11 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.5634889453921 | 0.0440730928006408 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.7827808477381 | 9.38276930366177e-25 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.73179305224624 | 1.2470734696085e-16 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.04330908690468 | 0.0449655473699631 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.26063988713027 | 4.84142472190835e-27 |
| 16 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.21801510299959 | 1.64824283762543e-12 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.63353613832217 | 1.93250447946232e-38 |