Chr:
Chr3
Start:
563230
End:
564777
Strand:
-
Ref_name:
LOC112938345
Sequence
(XR_003241536.1):
AUCAUCUUUGGUAUUUUCGGUUUAUUCAGGGCUUCGUGCUAUGAUAACUCAUUUUACAUUGCUGUUGGUUCAAACGUUAUCAAUUUUCUCUUCUGGAGUACUUCAGUUUUGCUGUUGCGCCGUCAAUUUCAAAAGAUACAAUUGUUGGUGUUUGAUUCUUUAUUUGUAGUUUUUUAGUACAGACCGACGGGCUUCAAUGAAAUUUUGUUGUAAACAUAAUGUUUUGACUAAUUAACUUGCUUCUUAUCCUUCUGGCCUUUGAGCAAACUUGUGUGCUUAAAUUAUGCCCCCUCUUACCCUUUCUUUUAUAUUUCAGGAGGUCAAGAUUGCAUGAGUACUAAGGCUCUAAAUCGAGAUAAUUCUAUGCUUUUGGAUCAAAUAUAUGACAAAUUGAGAACGGGCCAGUUGGCGUGCGCUCCAAGCAUGUUUGACAAAGUGAAAACGAAUUUGGAUGCUAUUUUGGCGAAGAUGAGGGCAAUGGGCGUUAACACGGAUGAGUACAAAAUAGACUUGGAAGCUCUUGAAGAGAUCAAGCAGGGUUUGCAUCCAUCGAGUGACAAAUCACGCAAUCGAUUACCUGCCGGUUCUAACAGCAGCGAUGACAAAUUUGCACGAAGUUAACCGUUACAAUCUAUGAUGAUUGAUGAGUUGAAUCUGUGUACCUGUUUUGAGUUUUACAGAGAAAUCUUAUGUGAUGAUUGAUGAGUUGUGAUUGGAUCUGUGUACCUGUUUUGAGUUUUACAGAGAAAUCUUAUGUUUAGCAUGGCUAAAGUUCAGCCGUGUUUCUUUCUCUCCUCUCUAGCAAGGACAUUUCUAAUUGGUUCAUCACUUGUGUUCUAGGAUGUGAAAAUUCUAAUUGAAGCAAUACUUGAAU
Sequence
(XR_003241537.1):
GUUAUUGAUUCUGAUGUAAUAUUUCAUUGGACAGGGAAAAGGAAUUGAGAAUCCUAACAAGAAAAGGAACAAACAUGCCCUUUCCGAAAGAGGUCAAGAUUGCAUGAGUACUAAGGCUCUAAAUCGAGAUAAUUCUAUGCUUUUGGAUCAAAUAUAUGACAAAUUGAGAACGGGCCAGUUGGCGUGCGCUCCAAGCAUGUUUGACAAAGUGAAAACGAAUUUGGAUGCUAUUUUGGCGAAGAUGAGGGCAAUGGGCGUUAACACGGAUGAGUACAAAAUAGACUUGGAAGCUCUUGAAGAGAUCAAGCAGGGUUUGCAUCCAUCGAGUGACAAAUCACGCAAUCGAUUACCUGCCGGUUCUAACAGCAGCGAUGACAAAUUUGCACGAAGUUAACCGUUACAAUCUAUGAUGAUUGAUGAGUUGAAUCUGUGUACCUGUUUUGAGUUUUACAGAGAAAUCUUAUGUGAUGAUUGAUGAGUUGUGAUUGGAUCUGUGUACCUGUUUUGAGUUUUACAGAGAAAUCUUAUGUUUAGCAUGGCUAAAGUUCAGCCGUGUUUCUUUCUCUCCUCUCUAGCAAGGACAUUUCUAAUUGGUUCAUCACUUGUGUUCUAGGAUGUGAAAAUUCUAAUUGAAGCAAUACUUGAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.38%
ME_num:
MEP:
12.4%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.95
Avg Expression:
1.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -3.40165194833885 | 5.23604234961195e-05 |
| 2 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -3.96594883981816 | 2.29924838763454e-07 |
| 3 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 3.09064862048498 | 0.0200024212862569 |
| 4 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 2.62741147742111 | 0.0164264056820765 |