Chr:
Chr3
Start:
1289736
End:
1290412
Strand:
+
Ref_name:
LOC112938337
Sequence
(XR_003241527.1):
UCCAUAUCGAUGAUUUUGUGGAUGACUGGUUCUCCAUUGAGAAGUUCAAGAAGGCAUAUGUAGGGACUUUCAGUCCAGUGACAUUGAAGGAUAGAUGGACAUGUUGAUAUAGGAUAUAAAAUCAAGAAGCCUAAAUUGUUACGGAACCCUGGGAGACCAAGAAUGGCUAGGAUAAAGGCAAGUGAUGAGGCUGGCACUAGUAAGAGAAAAUAAUGCACUGAAUGUAAUGAGCUAGGCCACACGGCCAAGACUUGCCAAGGAGGUCCCACAGCAAGUCAAAAGAGGAGGCACUCAUCUUUAGAAAUUGGAACAGUAGAGAGGGGAACAACGAACCAAGUGUUGCACAUCAAAUGCAAGUGCAAGGGAAAGGGUAAGUGACAGUGGCGAUGUAGGUGGAAGGGGAAGUGGCAGUGGCGAUGCAGGUGGAAGGGGAAGGCAAUGAAGAGGAGGGAGGCUAGCUUCAUGGUUUGCAUGAUUUGGACAUCUAUAUGCCCCUUUUAAAUAAUUUUGUGCACUUUUGUGCUAAUAUGGACUUGCAAUAUGAUCUGGACUUGUAAUAUGUGGUAUUGUGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
35.16%
ME_num:
MEP:
54.47%
HE_num:
HEP:
10.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.83
Avg Expression:
7.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.67889813723413 | 0.0177787454230157 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.78996583353463 | 0.00520919200302208 |
| 3 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 7.0944718758304 | 6.51187101005505e-07 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.45783695135222 | 0.0148005028896908 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -3.20175200540769 | 8.49450197107408e-09 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.21054876508172 | 3.55010686191006e-05 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.85739393778881 | 2.76597838354215e-09 |
| 8 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.99005055965187 | 5.73289298969878e-05 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.53263091308903 | 2.19350106438568e-05 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.35852794423219 | 2.6617964601089e-06 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.35845182227353 | 2.73983960166351e-06 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.35831949174019 | 2.68140432599748e-06 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.14626198262382 | 1.24188325446706e-18 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.63447295399117 | 4.32015410427319e-07 |