Chr:
Chr3
Start:
23602332
End:
23603128
Strand:
+
Ref_name:
LOC112938321
Sequence
(XR_003241475.1):
CGCGCGCAGCGUGGAGGCGGCGGCGAGAGCCCGCGGGCUUGCGCGAGGCGGCGGCGGCCAAGGGCGUGGGGGCGGCACGCGUCGGCCUCGUCGAGGGCAGGCGGGCGGCCGCGUAUUAGUACCUCAAGGCGCUGCGGCGGUGGCGGGCCAAGGCCUACAUCUACUCCAGCGGAAGCAGGGAGGUCCAGCGCCUCAUCUUCGCCAACACCGCUGCAGCAGGGAGACUGUAGGCCUUGAGGUGCUAAUAUCUGUCAGGCCUAUCCAGGAGGUAGCCAGCCGGCGGCAACGGCUGUUCCACGCCGACAUGUGAUGUGUGCAAUUAUGUCUGUAGACACUAAGUAAUGUUUAUCGUCGAUGACUUAUAUGUACCGUGGCUUAUCUGUAUGAGACACUUUGUAAUGCUUGCUAUAUACUCCCUCCAUUUUAAAAUGUUUGACACGGUUGACUUUUUAGUAUAUGUUUGACCAUUCGUCUUAUUAAAAAAAUUUAAGUAAUUAUUUAUUUUUUUCAUAUCAUUUGAUUCACUGUUAAAUAUAUUUUCAUGUACAUAUAGUUUUACAUAUUUUACAAAUAUUUUUGAAUAAGACGAACGGUUAAACAUGUGCUAAAAAGUCAACGGUGUCAAACAUUUUGAAACGGAGGAAGUAUGUGGCUUGUGCUAGUUGUGCCAAAAUUCUGUCCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.64%
ME_num:
MEP:
55.89%
HE_num:
HEP:
16.26%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.80
Avg Expression:
8.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.7580044055712 | 0.042124072985217 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.74001916541605 | 2.3991866630154e-14 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.02688627778146 | 0.0328809263152882 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.41198685050502 | 0.00499994656766452 |
| 5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.1650280078476 | 6.37048518218701e-12 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.42551716149625 | 0.00116696041627121 |