Chr:
Chr3
Start:
21900354
End:
21904119
Strand:
+
Ref_name:
LOC112938308
Sequence
(XR_003241440.1):
GCCACAACGACCCACCUAGCCCACCUUCUUCCUAUCCUCUCUCUUUCUCUCGCUCUCUUUCUUUUCCUCUCGCUCUCCCCCGUGCCGCCGCCCGCCGCAUCCUCAGGUCUCACUGCCAUCGCCGCCGCUCCACCUCACACGCCGGCCGCUGCUCCCUGCCUCCGGCGGCCGCCCCGCAGCCGCUGCCGGCCUGAAUCGGUUUCAUGGCUCCUCAUGAGCCUGCCCCCAAGCUAACCCUCUCCAAUCGAUGCUGCUGCCCAACGACGAAGACACCCGCCUAGAGUUCCAGAUUGGGAUUUUCCCCAGCUUCAGCACCCCUUGAGCCAAGCAUGGCUUGUCUCCCCCGAGUUCCUCCUUUCUGAUCAUCCCCUUUUCUCCCUACUUCUGUGAUGUGAUUUGAUUGGUACUCUCUUGUGUGAUAGCAUGCUCUGAAUUGUGAUGCUUGUGAACUAAUCCUAGCGACCAACUUGAUGAUGCUAUAAUCAGGAUUGUACUUACUGUUUCUAGGGUUCUAGAUAAAUUGGCUUGCUAGGGUUGGACGAAUAAAUUUCUGUAUGCCAUGAGUGAAUGAAUGAAUGCUGAUGCAAGUGCAGUACUGGAAUUAGAAAAGCUAAUGAAAAUCACACUAACAUAAUUAAGUCCUUGUAUAUGCUUGCAUGAUGAAAUAACUGAAUUUGGCACAACAGCAGGAUCAUAUUCUAGAAUAAAUCUUAUUGAAUGAUGCAGUAAUUUACAUGGUACUAUACUUUGAAAAUCAUGCCAAGAUAUGUACUAUAGAGAAUGGAACACCUUGAAUACAGAUAGAUGGUAACUGAUUUCUUUGGAUGAUUUACUGCUACUGACUGUAUGUCAUGACUAUAAUUUACUAGAUUAGAGUUGUUGAUGCAGGGAAAAAAAUAAACUAUUGAUUAACUAACUAUUUACUGUGGUUUUAUUCUGAGAGUAUGAUUUUAAACAUUCGUUCUGCUACACAAAUGAUUUGGUAGAAAAAAAAAACUUAUAUGUUCUGUUAAGUUAUUGAAAUUUAGUAGAACUACGACUAUUUAUCACUAUAUGCAUACUUAGAUGUACUUCUAUUGUCUCUUUUCUGUGUUUCGUAGUAAAGAACUAGAUACAUAUGCAAACUUAACCCAGAUUCAUAACCAACUGGUUUCGCAUGCUAUUCUACAAUUCAAAUGAUUAAUAAUUUAUGAUGGUUCCUCUAUUAAGUCUGGGUUGAUUUUCAAUACUUUUAAAUGAAAUCAGAUUAAUAUACACAUACCCUAACCUUUCCAAGAAUAUGCACAGCUUAGAUUUUACUUUGUUUGUAUGACCAAAAUCUGAAAGUUCUAUAUUUUUUUUUUAAGUGCACAUGCAUGAUCAACUAUCUGAAUAAAAUUCAUGUCUUUCUUUACUAAUUUCCCGUUCCUGGUUAUAUAAGCAGUUACAUUGUGAGUUUUUGACUGUGUACAUAGGCAUAGGUAGCUUAGUUUCAGCUACAGAGAUUGAGCAGAUUACAUUCUAUUGCUGUCUCAAAAGGUUUCUGAUGGACAUUAUGGUGUUACAACUAUCUUAAUUUCCAAGUUCUUAACGUAUGGGGCAAACUGAAAAGUGAUCUGUGCUCAUGCCAGAUCCUAACAGGGGACAAAUGAAGUGCAGUGUUAAAGUUGCAAUGGCAUUUCAAAAAAAAAAAAAAAAACAUUCAUCUUUGAUUUCUUGACUGGGGCUCAUGUCGUGGCCACCUCCAUCCUCCUGGUUGCCAACCGCUGAGGAGGCGCGGUGCAGCCCACCGCUUCCAUCUGAGAUUGUUGCGUGGGCGACUGGAAGCGGCCAGAGGUUGAGUUCCUGCUGGACAACUGUGGGCGAAGAGGCAAAAUGGCUGACGAAGGCCAGCGGUGGCUGGAGAUUGAUGAUGAAGCAGCAGUCUGUGGAAUUCCUCUUCUCCAUAGCCACUUAGCCCCUCCUUUCAAGAUAACUUCUGUAUGUUUGAUGCCCCUCUAAUAAUAGCUUAGGAUUUUUUGAGAUAUCGAUAGCUACAACCAGUGCUCGUUCCAUCAUUCAAUGACCUGUAACAAUUUCAAAAUAACUAUGUUGGGCACCAGAUGAACCCAGGCAGAGGUUCUUUGGAUGGGUUUUUGUACACCACAAGGGUCUAUCUGCAGAAAAUUUAACAAAAAUAAACUGGCCGUGCAUCUUACUAUGUUCGCUAUGCAAUGGAGUUUAUGGGGGAAAGUUCAGUUGCUUUUUGUUCCAUGUAAUAUCCUCGAAUUGUAUUCCGAAACCAACUUCUUAAUAUAAUGGGCAGAGCUCCAACCUUUACUUCAGAAAAAGAGAAAAGGUCACCUUCUCCUAACUUACUCGCUUUGUUGUUUUUUCCAUUCACAUGCGUUUGCAGCUUGGCAACUAGAGGAGCUGACUUCUGGAUUGAUCUCCUCUCUUAUUUUCCAACAAUGAGCAUUUGUUGCAGGUAAUGAGCUUGUACAGCAAAAAAGGAUCAAAUUUGAAACCAUCUGUUACAGCUUAUAUGUGUUUACAUUGAAUUAGCAAGUACAAUAAAGAAGGCUCAAAUUUCCCUUUUAUUACAGUUAAUGAGCUUGUUAAAGUCUGUCUAUAUAUUAAGGAAGAAAAUUAAUGCUGACAAAUUAGUUGUCAAAAUUUGGAAGGCAAAAUGUGGUUUUUUGAGCCAAGUAAAAUUCUUGGAGUUGAACUAUCCUAUCAGAUCACAAUUGCGUGAUUAAAAUGGAAGUCCUUUUACUUGAUAUUGAUCAAUAGGUUUUAAGAUGAAUCUUUGAUGGCCGGCUUAGUCACCUGUUGCUUUCUCCAUUUUCUAUAUUUUAUUUUUAAUGUAAAGCUUUAUACAAUAUAAGAUAGUUUCUCGCAAGCACUCUUGGUUGGUGCAUAAGCCUAAUGUUUUUGUCAUAUAUGGAAUGGAUUGGUCUUAUCUAUUAUAUCUUUAAUAACAAAUUUUAAGAUAUAAGCUUUUUGUGACUUCUGGUAUUUUUGUAAUCACCACCGCAUUGUUCAAUACAAGACAGCCUACUAUUCAUUUUAUUGCCAUAUCUUGAUUUAUUAAUCCUUGUUUUUGUACUACCAAGUGCAAUUGGUACUGUAUGCUGUUUUACCCCCAGGUUGCUUCGUACAUUGCUGUAGUAUGUGAAGGUGUGGAAAAUGAGCUUCUUGGAAACCAAAUUUCAUUAAUAGACCUCACUUAGGAUCAGGGAAGAGGAGCUGUCAAGUGCCUAGAUUAUUUUUCUUACAAGAUAUAUACUGUAGUAAUCACAUAAAACUGUUGAUGGUCUUAAAUUCCAUUGUGGAUGACUGAUUGCCUGAAGUAUUCAAGUUUCAUAGGUACAACUAAUAUUCAAGUUUUAUCUGUGCUAAUCCCACUGUCGAUAUCGUUCAACCGCCGUUGUCUGCACUCUGCACUCUGCAGCACUGUGACUGCCGUCGUUUGCAGGCAACAGUUGAAGAUGCCACUAAUCUGUAUGGAUGGCCCCCUUGCAUUGACACUCUACUAUGUGUCUGUAAUUUUGCUUCUGUUGCUUAUGACCCCAACAGAAUUUGAUGAUUCAGAUUUGAUGUACACCAAUAAAGAAUGUAAGCAAAUAUAAGAGAAGAGAAACGAUGAUGUUCUUAGUGACAGAUUAAAGGCGGGCUUGAUCCUCUUGAUAGUGAGAGCUACUUCCUUGUUUUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.61%
ME_num:
MEP:
45.73%
HE_num:
HEP:
53.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.51
Avg Expression:
9.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.20169344397577 | 0.00644857604440156 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.14411318113811 | 1.71231696135864e-06 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.2731589382495 | 4.12413661101968e-06 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.16645746309633 | 1.73571019288821e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.68745388742341 | 7.25526735469874e-13 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.553377307481 | 3.78832791706521e-06 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.55346570578713 | 3.91275219003294e-06 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.55360261551614 | 3.83259682535139e-06 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.1177749583764 | 0.00329744229278869 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.59626652245857 | 5.19032163192039e-11 |