Chr:
Chr3
Start:
31082686
End:
31083809
Strand:
-
Ref_name:
LOC112938304
Sequence
(XR_003241435.1):
UUUAUGCACCAGAAUCUGUAGUAGAUUGUUCAGCUCAUUCAAACUGAAUCAGUAACUGCUUAAAUUAGAACCAAAUGCAUUCUCUAUGGGAUGACUGAAACGACUGAUUGGUGCAGGAACUAGGAUUAAGUUACAGUCAAAAUCAGUAAUACUUUUGAGAGCCGAUGAUUUCUGCAUACUUUAAUUAAGGCCACUAUCACCGUUUAAACCAUAUAAAGUAAAUAGGACGCCAUUUGCUCUUGAAUUGUCAUGUUUUAAGCAUGUAUUGCUCUGAAAAAAGAAUACUUCAACCUUUCAGCACAAUAUAUUUUUAACUGAAUACUUUACGCCUUCAUUAUUUGUGUCCUCUAAGAUUGUGAAAUUCAGUUUGUUGCUGUUCAUUUAUGAAUAUUCCAGUUAUUUUGCCAGAUGAAAAGCAGCUUAAGGUUUUGAACCCAAGCAAGUUUGUUUUAAAUGUUCUGACGGUACACAUCAUUUGAGAUUUGGUGAUUGAAGAAAUGCAUCGUAACAUUUUGGCAUGGUUUGAAAAUAUCGCAAAUUCAUGCUUCGUCAGUUAAUUCUAAGUACCCAUGUUCUGUAGCCUCUCCUUUUCUCAUUUUUCACACAAUCCUUUUGAUCUGCAUACGUACUAUUUUUCUUUGUGUGCUACGGAAUGUGAUUAAACCAUGUUGUUCAUAUAAAGAAGCAUAGAAUUGACGUGGGUGCACAUGUCCAUAUUUCUCUUUGCUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.53%
ME_num:
MEP:
66.46%
HE_num:
HEP:
12.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.72
Avg Expression:
8.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.93016971724665 | 5.66128207939788e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.65983656785823 | 0.000339512250633439 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.80337731419562 | 6.13220011242097e-14 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.9846961746805 | 0.000926939657594603 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.47811508955001 | 4.97890006330771e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.14306789898531 | 1.76908754161203e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.52652883749064 | 0.00356645798138545 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.71346617306413 | 8.17317001562456e-05 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.77394336787081 | 0.000161998822796184 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.3985769921311 | 2.59209874066196e-17 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.37104212706689 | 1.60348440145608e-08 |
| 12 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 6.5157522484952 | 0.0246393429854539 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.67612491206432 | 0.000127265194769453 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.73650114193824 | 2.91923349568122e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.28454035423915 | 0.0180467772895282 |
| 16 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 3.82215862808344 | 0.000144115573263553 |
| 17 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 3.82206996362281 | 0.000147921989844292 |
| 18 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 3.82198709632341 | 0.00014488642384885 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.79887620517025 | 3.56564766889426e-07 |
| 20 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.01404501497304 | 0.00577793260629301 |
| 21 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.19095937771161 | 0.025182326650713 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.45474269717595 | 0.00388124893346347 |
| 23 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.40076478488479 | 9.11605471262703e-09 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.44625611836585 | 0.000452763789211462 |