Chr:
Chr3
Start:
9965002
End:
9965945
Strand:
-
Ref_name:
LOC112938295
Sequence
(XR_003241419.1):
UGACCAGUGCCUGGAUGGUCAUGUGGAUCCGAUUCUCUCUCGAAGUAGUAGUAUAUAUGCGAAUUGAAUCGGCCGUGUAAGCACAUGGUAGAUGAUAGAAUAGACCAUCAGUCCAUCACCCAACAUUUGCUAUCAUGGAUGGUACUAUUUGUGUGGUAUUGAUUCUAGGUGUACAUUCUCAGUACUUUAUUAGUUGGUGUGGGAGUCAUUGGUAGUUUGGUACCCUUGCGGAAUUCGCUGGCGCGCAAUACAACAGUAAUGAUCUCUUAGGCAUGCAUGUGAGCAAGCAAUGAGAAGGAUAUCACUGUUCGGGGUUAAGAAUCAAGUGAGUAAAAAUAAUUGGGAAACCGACGUGUUUACUUUGUGGUCGACCAGGGGAAUAUCAGAAUAUCUGAAUAUGCGAAUGCUGAAUAACCGACGAGGAAGAAGCAUUCUCGCAUUCAGUGCAACGCCGCCGACCACUACCACUAGCUGCUGCAGCUGCACGACGCCGCGGGCCAUUUCUCGUGAAGCAACAGCACCGGAUUUUAAAACCUGGCCUGGUCCAUCUGGGGAGUGGAGACAUCACGAGGGAGUAACGUGCUGGCAUUCUCGGUUCUCCUACCCAGAGCAUUUGUGGUUGUGCAUCCGCGCGUGUACGCGCCUAAUUUAGGCCUGUUUAGAAGGCCGCGUUCUUUUCAUCUAGCCGGUUUGGAUGAUUAGCUAUACGAUAAAACGAAAUAUAAUUAACGUACGAUUAAUUGAGUAUUAUGAAUUUAUUUAAUGUUUUAAAGCAUCUGGCAGUGUAGUUUUGCCCCAAAUCCUUAGCUCCCCAGUUCCUGACGAUGUAUGCUACUACUUAUCUUCCUAAACACGAUUUUAGAUUGGGAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.27%
ME_num:
MEP:
17.07%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.91
Avg Expression:
4.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.81357037751293 | 0.00434159077358662 |
| 2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.65835791972601 | 0.0146976356053978 |
| 3 | 9311 // leaf // control--/--9311 // leaf // salt | 5.79122258412396 | 5.18903953089109e-62 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.4559592266075 | 0.00638659947657505 |
| 5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 5.0191250496745 | 0.00356244514696245 |
| 6 | 9L136 // leaf // control--/--9L136 // leaf // salt | 5.99781952432981 | 4.09484414906509e-85 |