Chr:
Chr1
Start:
6656764
End:
6657263
Strand:
+
Ref_name:
LOC112938268
Sequence
(XR_003241303.1):
GUGCAAGCCUGCAACACCGAUGCAGACUGUUCAGAGGAAGACACAAAACAAGAUCAGGAAGGGAACAUUCCUACAUUCUGAUGACAUGAAAGAAUUGUACACGCUUCGAAAGGCACCUUCACUAUGUCAGAGAUGGCAAUGGAGUGGGAGACUGGUGGGGAGGCAAGGCAGUAGCAGUGGUGGAAGAGAAUAAUUGACAAGUUUGACUGAUUGCUAUAUUAUAUUAUUAACAUCUUGUUUAUUGUGAUAAGUUUGGUUAAUUAUUUUUAACUUAACAGGUUUGACUCAUUUUUAAGUUCUAGCUAUUUACCAAGAUCAGUUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.32%
ME_num:
MEP:
16.87%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.86
Avg Expression:
1.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.95883279554629 | 0.0108930747891572 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -6.35937155594986 | 0.0305953224425962 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.95130263399075 | 0.00203053379559935 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.78664839833396 | 0.0257645470919424 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.33567891571263 | 0.00652814958131713 |