Chr:
Chr3
Start:
17897875
End:
17901961
Strand:
-
Ref_name:
LOC112938238
Sequence
(XR_003241298.1):
CCUAUUCCAUAAAAAGACUUGGUAAUGGUGUUAACUCAAGAGAAGUUGUCCUUUUUGCCCUUACUCAUUUGACCCUAUUAUAUCAAAGUUUUUUUAUUCAUACCUUUUUACAUAUUUGUAACGAAUUUGGUAUAGUUUCCACUGAUUUGAGAUAAGUUUGAAAGAUUUGGCUUUCAAUUUGACAUAAUUAUGGCAGAUAUCUUCGAAAAUUUUCACAGCAUAUUGCCCUAUUUUGUUGAUCUCAAAUUGCAUAUAAUGAAGAAAAACACAAGUAUCAAAAUAGCCACUAGUUCUCUGUCGUUCAUGUAGGGAAACGUUUGUGUUGUUUUUGCUGCUAUGUAUGGUGUUCAUUCAAAAACCAAAAUUGCAGGAAGCACGUGGGACCCACCGGCGACGACAGGCAGGAGGCCAAUGCUGCCGCUGCCGUGCCUUUUGAUGCUCUCACCAUCGCCGCAGUCCUUGGCGCGUGAGCAGCCACCGGUCGACGCACUCUCUGUGGAACUCGUGCCCGCACGACAGCAGCACGCGCACCUCGUCGCCAGCGGCGUACUCCGCCGGCCAGGCACACCGCGCACACACCGCCCUCCUCGUCCGUCGACGACGUCUCCUCGUCGGCGACGGCGCCGUCGCGGGGCAUCUGGACCACGUGCGCCGGGAUCCCGUCGAGCGCGCGCUUGGUCUCCUUGGACGGCUCUGGCCGCAUCAUCGAUGACCCUAGCACGCCGUCUCGCCGUCACAGAAGCAGGCGUAGAGCUCGGUGAGCAUUGUCGCCCCCUUCAAGCGCUGCCAUCCCCUUCGAGCGUCUCCGCCGCCGCUCGCUCCAAGCGCUGCCUUCGCUGCCUCCACACGCUCUGAGCGGAGCCGUUGCCGCUCCUUCUACCUCGGCUGUGGCAACAGCUCCCUCUGCACGGCCGCCCCCUUCGAGCGUCGUCGCUGCCGCCGCCAUCGCUCAUUCUGCUCCCUCCAUGGAAAGUGGAAACCAUUGCGCCAGAUGAAGUUGGGGAUAAGAUGCUUUUCUGGGCAACGCUCGGCUCCGGAUCUAGGAACAUCUUCAAAAGUGUGAAGAGAACAUGGCAUUCUUAUAUUCUGCAUAUCGAAGCUUAGAAGUUACGGUCAUAUAGAUUUUUAUCAACUACGGAUGGAGAUUCACAUAUAGACUUCAAUAAUUGUUUUCUCGUUGUGUGUUGGCUUUAUUAUUUCUGUUCUUAUUAUUGUGUGAGCAUUUGCUCUCUUUAAGAGAAUUUUGUAAUAAGUGGAUGUAGAUUCUUUGAAGUAAAGGCCGGAAUUUUUAUUCCACCAUAUUAAAAAAAAUAUCAGUGUUGGUUUGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.7%
ME_num:
MEP:
30.08%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
1.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.71840378556841 | 0.0150562557973918 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.82245531340676 | 0.00950644750033373 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.01427494998446 | 0.0245835652698786 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.21177484389606 | 0.0358279964529242 |
| 5 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -2.23581044297369 | 0.00352260285848141 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.08280288345532 | 0.00515166053397281 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 3.29943479498126 | 0.0164265562293383 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.36922351854376 | 0.00305308058492051 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.85616703384704 | 0.0495602932395597 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.92340186234966 | 0.0127989239799926 |
| 11 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.24981526070927 | 0.0103495555093878 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.3124830527834 | 5.15963444312094e-10 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.67387095099516 | 0.0155540010156631 |