Chr:
Chr3
Start:
17893302
End:
17895338
Strand:
+
Ref_name:
LOC112938237
Sequence
(XR_003241297.1):
UAAGCAAGAGGCAAGCGUCAACAGAGGUGCCGGGGAGGAGCAGGCCGCCGGCGCGGUCGCAGGAGAAGGGAUGCGCUGGAACGAUAGCACAGGACUAGGGCCGCUGGACAUCAUCGACGCUAGCAGAUAAGGACACCAACAACAGGUCACUCUUGUCGUCAAACACUUUGAUGAUCCAAGGAUAGUGAGUGCAGACUUGAAAGAUCUUCUUCUUCUUCAAUCAAUAUCUGUUCUUGUACAGUACAAAGAAUUCAUGUUUCUAUUUGAGAACAAUCGGGGGGCUAUAAACAGAAUGCUAAGAUCACUUCUGUCAGCUUUUGGUAAUAGAUCAUGAUACCUAUUACCAACAUACCUUUUCAACUCUGCAAAGGUUUAGGUUUUGCUUCAUCCAAGAAUGCUGAAUCUUCAUCAUCUGCAACUUUCCAGGUUUACUUUAAUAUUACAAUCUCUUUUGUAAUUAUAUUCAUUCUUCUAUUUAUGUUAUCCUUUCUGAAUCGACUUUUCAACACAUUAAGUUGGACAAUGACUGAGUUCUCCAUGUCCAUCCAUGAGAUGCAAGAUAAGCACCUGGUGGAUUUUUUUUUUGUUUUAUAUUUCCCUUGGUGCAGAACUUCAACUCUUUGCUGAUUAAUCUUUAGUACUCGGGUUACAUUUUCAGUUUAGUAACUAAACACCAUCCUUUUUCACAUGUCAAAAUGCAUGAACUUUAUCUUAGCUCUGCAAUGAAGGUAUACACUAACAGGAUCCUUCCUCUUUUUGUUUGGAGAACACUAACGGGAUCUCUUGACAAGGAUAAAUUCCAGUAAUUUGGUUGCUUCAGUUAAUUGCUUUUUCAAUAUUUUAUCCCAAGGGUGUAGUCAUGCAUGUGAAGGUAAAUAAUUGUAACCAAUAUUUUUCAGGUUGCUGAUUUGCAGCAAAGAAAGUGCAUCGUUAUUUUUUACAUAUCAUGUAGUCUUGCAAGGAUCUUGGAAUUCUGCGCCAGAGAGAUCCCUCAUGCGUUACUCAUGGGGCCAGAUAUGAAUCUGCGGAGAUUGACUGAAUUAAUUGUAUUUAUUUUGAACCACAUCAUAUCAGCAACUAAUGCAGAGUGGUUUUACAUGCAAGUCCACAUCUUAAUCUGAAUUCUGAAGUCUGAAAAUUAGCAGUGUUUUAGUUAUUUUAAGUUGAGACAGUGAUCUUUAAAGGUGGUUCAGUUUAGUGCCAGAAUCUAAAACGCACUACUUCUAUUGUUGAUUUGAGCUGACUCAAGUAUGAACCAAUAUUGUUAUAUCCUGACAUCUUUUUUUUGUUUCACAGUACACCAAGAUGCUUCCUCAUUUUAUCGGUGCCUAUGAUAAUCUUUAAUGUAUAAGUAUAUGUCAAUGUGCAUUAGGAAUGAUCGUAUUUUUCUUCAGUUGUAUAUGUCGACGUGCCUUGCACGUGCACGUUCACUAGUAGCUAAAAUAUAAGGGACUUUAUUCUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.46%
ME_num:
MEP:
82.72%
HE_num:
HEP:
13.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.64
Avg Expression:
8.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.48750033481112 | 1.15811230780558e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.19932268011758 | 5.28444363569912e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.02645325825217 | 2.37369352731793e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.17006358274835 | 6.59749802720948e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.24705431074039 | 1.39076162183771e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.51361962359918 | 7.10821322623112e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.17745130018691 | 2.38048008645226e-09 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.11998380146285 | 2.17185822187919e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.2350813446731 | 6.93619061071541e-11 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.72310084652692 | 0.0110732127547364 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.72301669154203 | 0.0113561837717945 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.7229210069529 | 0.0111255668398239 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.39881432529887 | 4.01634401803999e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.41961154580361 | 7.89317755101807e-10 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.3317988000573 | 0.000528228500244609 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.19032672595531 | 7.01899869210114e-11 |