Chr:
Chr3
Start:
3250313
End:
3251903
Strand:
-
Ref_name:
LOC112938218
Sequence
(XR_003241268.1):
CACCCAACGCUCCUCUCCCCGUAACUCCCGUCCCCCACGGUCGCCCCAAAUCUCGCGAAACCGCCGAAGAAGCUGUCGGGCUCGUCGUCGCCAAGCCGAUCUCCUCCGCGCCGCCAGAACUUCGUCGCCUCUUCUAGAAACACGACGCGCACAGACAGAGAGAGAAAAGAGGAGAAAAAGAAAAGCGGCAAAAGUCGGGAAUCCCAAGAGCAAGGAGCGGGCGUGCUUGGCCGCAGUUGCCGGGGACCCCCAACGUCAUCUUCGUCGGCACGGAAGAAGACGGCAUCUUCGCCGUCGAGCUCGAUUCGCUGAGCGUCAGGAAAGUGUGCGAAUUGGACAAAUCACAAGACCUUUUCUUCCCCUUCGUCAGCUACUACGCCGAGUCAUUCCUGCUGAGCCUAUCAAGCAGCAAAUUGCCAGCACCAGCGGCAAAUUAAUCCACCAUCUUGCAGUCUGAUCGAUGUUCUUCGGUGAUUUGUUUCGUCUGCGGAAAGUUCAGGGAGACAAGUAGUUUAGUUCGAUCACUUGGUCAGUUAGCAUAGUUCCUGACGAUUUUUUUGUUGUGGUGUUCUUCUUAUCAAAUUGUGACCAUGGAUCGAACACUUAUUUCAAUCGAUCAGUUUCAGCAUACGCGAGUCAUUUUGUUUCAGUCAAUGCCUGACACAACCAUCAAGUGUUCUGAAAAAUGAAUCGUUGUGGUUCAGUCUCAGUCGGAUUGGGGGGAAUUGGGAGGGUUUUGGGUCUAAUUGGUGUCACUUUUCUGAUCAUCGAGUCGUCGUCCGCGGAGAAGACUAAUAUCACUCAUGAGUUAAAUUUUAGUGGGAGUUAAAUUUUAACUCAUGGUGACGUGGACGAAUCUCGGACGUUCAUUUCUCGAUCCAAUGGUAUAAGGUGAGAGUUGCAUAGUUGCACUGAAUUAGGUGAUUGCACCGGAUACUUCCCCGUGACCAUGAGACUUUGGACAUGGUGAUUUAGUAAGGAGAGCUAAUUUUCUGCUGUUGGGACGUGGUAAAUUCUCUUCUACCAAACCAUCUGAUGUGCUAGCUCUUACCGUGCUUGUCUAUAUAUGCUAAAAUCACUUCUAAGAACUAUAUGAUGUUUCCGGCAAGAGAGUCAAAUCGAUAUUGUUCAGAAUCAAGAUACAUGAAUAUUGAUCUCUGCAAUCUUCAGUGAGUGUUGAGUUCUGUGUGAGGAUGUAAGUAGGGGACAAGCUCUAUCAGUCUAAAGAAAUAAAGAAUAGUAUUAAUCUUACUUUGAUUUAAUAGUCGAUAUGCCCUCUGUGUAAGCUGUUCCUUGGUUCUUGUAAAAGAAAGAAAUGCACCUCGCUGGCUAGGUUAGCAUUUUUAUCAGAAAUUUUUAUCUGAAUUGAUUCCUAAAUAUAGAUACAUGGUGCACUAUUUUUGGUCUAAAAUGGAGUUGAUUCCUGCUUGUCUGUACUUGGAGCAAGCAGCUCAGUCCAUGGAUGCCUUGCUACGUGUAUUGACACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.52%
ME_num:
MEP:
42.28%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.74
Avg Expression:
1.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.57399468527276 | 0.000137530810671868 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.47494426388532 | 0.00019614114455295 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.91992924319319 | 1.73284289855896e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.56045041792517 | 0.000587904107305331 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.13126925275563 | 0.0313860008536597 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.39250891558325 | 0.0217537343882031 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.3897070363159 | 0.0178351030937182 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.42511074563637 | 0.0318689797880736 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.88837147582268 | 7.10575360526002e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.10969192604227 | 0.0200755660840781 |