Chr:
Chr3
Start:
19896827
End:
19899759
Strand:
-
Ref_name:
LOC112938217
Sequence
(XR_003241267.1):
AGAGAAAUAAAAAGGAAAAGAAAAGAAGAUUCCCUGACAGAGUCCAUUUGAUGUUUUUGCCGAAGCUGGGAGUUCAAUCAUAUAAGUUAGUCUCAUGUCAACCUAGUUCUCAAGUCUAGAUUAGUUAGAUGGUUUAAGUCUAUAGUAAAACAUCAACGUCGAGUCCUUCUAUAGCCUCUGCUGGAUUAGUUAGCCACAAGCUUGUAAAUUCCCCUAUUAUUUUAUGUAAUAACGUCUCCUUUGGAGCCUUGACCAAGUGCAUGCGAUGAAGAUCCAGAUUGUUGAACCUGCAUCAAUCUACCAAUCCAGGGCUUGAUACAGUUAAACAUGUCGGUUUCCAAAUCAUUAGUUUUGGGACCCGACAUAUGGUCAAAGUGCCUUCCUCCGCUACAAUCUACAUUGAGAUGGAGGAGAAAUCGACAAUCAUAGGUGACCAUGCCACUGCCCCAGAUAUUCCAAUAUAUACGUCAUGCUGGCGCUAAGUACACUAAGGCUUUUUAAAUUAAGCAUGGUGCUGUUAACGACCAAAUUUGGUAAUAUAAGCAUCGGAAAAGAAGAUUAUAUCGAAGUGGAGUCGAAGGCGGAGAUCGAUUCGAGAACAGAGCAAGAAUCGGCUGGAGUCCAGAUCGGCUACGAUUAGGAUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.52%
ME_num:
MEP:
6.91%
HE_num:
HEP:
10.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.97
Avg Expression:
30.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.2459470419756 | 0.0434651740437637 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.39455924181049 | 0.0346335814251408 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.50415205237315 | 0.0275471146364516 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.78580643658804 | 4.50339810922679e-05 |
| 5 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.75023231654424 | 0.000502280699434486 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 3.15955815397982 | 1.98193145555204e-73 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | 3.89536070995578 | 2.90713775265852e-58 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.20821893243125 | 0.0385466698176295 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.68464864584856 | 0.0199784359705662 |
| 10 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.33328573744059 | 2.88330417950583e-26 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.82279565322231 | 0.0121825089588687 |