Chr:
Chr3
Start:
6533903
End:
6534628
Strand:
+
Ref_name:
LOC112938215
Sequence
(XR_003241264.1):
GCACUAAUCCCAUCUGCCCGCUACGCUUUCCUUCCUCUUGCUCCGCGCCUCCGCCGACGAGCUCCGGUGAGGAGCGGCGGCGACCGGCAGCCGGCAGCCGAGACAGACAGCAGUGAAGGAUUGCCAUCAACACGAACCAACUGGACAUCGAAAUGCUCUUGCGCGGCGAAGCCGGAGACCAGCCGUCGGCCAAGGUCUUCCGCCGCUUCGUCCAUGACGCCAUCGAGAGACCGGACGAGUUCAUAUUGCAUCCUGCCGCUCCGCUGCCACCGUCCGUGGAGAUUGUCCGCGUCAUGGAUGUGAUAUCCAAUUUUGUACCCCACUUCCUCUUGAAAUUUGCAGCAUCUGAGUAGGUAUGGAGGGAGUGAUGCGUUUUUUGCGAUUGAUGAUUUGGUCAGGUUUACUCACUGAUUCAGCAGAGCUGUAGAGGAACACGCAAUCAGAUAUGCAAGGCUGUGUUUAGUUCAGCGCAAAGUUUAGAUUUUGGUUAAAAUUAAAAAUGAUGUGACUGAAAAGUUGUGUGUGUAUGACAUGUUGAUGUGAUGGAAAAGGACUGAAGUUUGGAUCCAAACUUUGGAUCUAAACACAGCCUAAAAUGCAUGGUGCAAUGAAUCUGCCAUGGUGGUAAGCUGUGAAACCUGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.91%
ME_num:
MEP:
33.74%
HE_num:
HEP:
9.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.86
Avg Expression:
4.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.29496367991479 | 0.0233002672531008 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.57833172144173 | 0.0102306729032831 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.60828052702298 | 0.00409088377793003 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.56704146982953 | 0.0069280209736273 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.10695281178972 | 0.000563099168133459 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.66949899149877 | 1.52761512768504e-05 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.99250707807869 | 0.0188649829013369 |