RiceNCexp:Browse

OSA-LNC112938211

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr3

Start:

10674719

End:

10676466

Strand:

Ref_name:

LOC112938211

Sequence
(XR_003241248.1):

CCCUCUCUCUCUCUCUCUCUCUCUCUCUCACGCGCACGGCAGCAGGCGGCGGCGGCGGCGCACACGCACCGGAAGCGGCGGCGAGGACAGCCGCAAUAGUUCGAGGGGGUAAUUCGUACUUUUUCCUUUUACUUAUCUAGAAAAUGCAAACAAUAAAAUCUGAAAGCUGUGUAAUUGGGGAUUGAACACCUUUGCAUAACUUCUUAUAAACAUCUCACUUUUCUCAUAUCUGCGUCUAUUCAGGGCAGAUUUAUUUGCAUGUUGCUGAAUGGUGACUAUGUGGCUGGGUGCAUUUCACUUUACUCAUUGUCUACCAGUGAUCAGAGCAGACCUUUUUUGCCUGUUGAGUAAAUUGUGGCCUUUGUGGCAGGGCGUAUACAUUUAUGUGUCUCAUAAUUUGUUGUCUUGUACUCUUGUAGAAUAUUGCAAUUAUACUCUUGUAGAUUAAAUUUGUGCAAGUAAGUAAUCUAUUGUUGUUGGCGGCUCGGCUGGUACGCUUUCGAGAAUUUAAUCUCUUUCUUUCUUUUGCAAAAUGAGUAGAAUUUCAGCCUUCUUGGAGAGGUUUGUUCUCUUUGCCUGGUUACUAGAUAGCCUAGAAGAGCAUUUUUUAAAUUUAUUUAGUCAAAAGUGAUUUUUAGUGAUAUUUCCAGAAACUGUGCUAAAAAUUACCAUGUUUCUAUAUCCAGGUUCCAGCUCAUUCUUUUCAUUUUGAUAAGCAAACUAGGUGUCCUUUUUUCAUAAGCAGGAAGGGAAAUCUUAGGAUAAAUUAGUACCCUUCCUGUUUUUAAAAUUUAUUAUAAGAUACGUUGAAGUAUUCUUUUGAAAUAAAAUUGGAAUUUAAAGCAAUCUUCCAGGCCGUUAAUUGGGGCCAUACAGACUGGGUCUUCACUUUUCUAAUGCCUUUCGGUCUGAAUUAUGUUUCGUAUAGCUGCUCCUUUUCUUUUCAGGGCAGGAAGCUGCACCUCGUCCAUGUUGUGCUGUCCAGGGUCCAGGCUCCAGGCUCGCUUGCAACUGUGGGCAAAUCUCGUGGUAUUUCGUGGCCGCUACUCCACCAUUUCAUGCUAAGCAGCUAAUGCCUGUCGGGCUAAUGGCAUCACGCAUUUCAUUAGCUACUGACAAAAAAUGAUAUUCUCUCCUCCUGAUGAUGGUUGCCAGCAGUGAGCGUUACAGUGAACUGCUCCUUUCCAAUGGAGCCUUGGCACGAAAGCGACCUGGAUUUUUCGAGGCUGCCACUACGUGACAACAAUUGUGAUAGGCAGUUUGGUGGUGGCCGCAUGCAGCUGCUUGCCUUGACUGAAAAUUGAUUUUCCAGCUUGUGACCACUGUUUCUGGCUGUCAGCUUGCUCCGGAGAUACAUACCAUGUGACCCCAUGGAUCAGUGGCAUGGAAUUCCUUUGGUGUUUUCAGGUUGCUUGAAUUUCUGGGAAGCUUCCUGUUAGGCUACAACGUUAACAGUGUUUGAGCCAGUUCGUUUUUAGUACUCCGUACAUUUCAAUCCGUGGUAAGACCUGAAAAAAUUUCACGUGUGUAGCCAUGCUCUGAUUUAAGCCUGUUCGGUCGCUUUGUACAGCAGUACAGGCCAGGUCAUCUGCAUUGGUUGCUGGGUGUCCGUAUACGAUUUUACCUGUGCCUGGUCACCUGGCCUUGCUGCCUUGCAUAUGAUAAGCUGUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

149

LEP:

30.28%

ME_num:

342

MEP:

69.51%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

shoot_apical_meristem

Tau :

0.72

Avg Expression:

3.08

Tip: OSA-LNC112938211 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-1.12243013661512	0.0414435346097748
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-1.63539188526502	0.00177723804973337
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-1.86586568004039	0.0066386789384861
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-1.57164164379179	0.00927994595346259
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-1.97091971810361	0.00169452375456989
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-1.68788703426833	0.000666541092943602
7	IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h	-1.35393545488933	0.000407503542697387
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-1.67305776010658	0.00288710964879761
9	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256	-1.77582495533511	0.00859827962505594
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-2.96523381363056	1.1971761851959e-05
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-1.32365892257137	0.00443412377632174
12	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12	-1.44802411502616	0.000846128430629661
13	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341	-1.47797881802912	0.0103160075021649
14	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342	-1.36151282323828	0.0493998205948532
15	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-1.86244968623118	5.94772102460334e-05