RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112938207

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

20898755

End:

20908731

Strand:

+

Ref_name:

LOC112938207

Sequence
(XR_003241246.1):

AUGAAACAUCAUUUCAGCAAUUAUUUAAAUUAAAAAGUCAAUCAAAAUCCUCUUCUUUGUCUCGGGCCAAAUCCGGCCCAUUCCCUUCCUUCCUCUCUCUUCCGCCGGCCCAACCCGAGCCUGCAUCCUCUCUUCCUCUCUCUGCCGAAGUUCUAUUUGCUUCCCUCCUUCAAUCGGGCCGAGGAAAUGAAGCCCGGCAAGAAGUCUGUUUUGCCUCCCUCUGCUACAGUGUCGCCCCUAACCUCCAGCCGGCUGAUCUCCUCCCUGCCGUGCCCGUGUACAGCGCCGCCUCCCCACCAAAUUCGUCCUCUCCGUUGCUCCUCUUUCCAAAUUAAUUGUGGGAAUGGAAUCCUCUCAAUCUCCUCUUCCUUUCCCCCAAGAAAUACCGAAAAGUUUAUAUGGAAAUUCUUUCCAAUUUCGCGGAUCGAACCCUACCUAAUCUGUCGCCGAUUCCAUCCGUUCCCGAGCCGAUCUCUCCCUCUUCCGGCUAUAAAUAGCAGCCCCUCGGCCUCCUCUUCCGUUUCCCCUCUUUUUCCUGAGCCGCCGUGCCCUAGCCGCCUCUCCCCACGCUAGCUUCUCUCUCCUAAGCCGGCCACCGCUCCAGCCACGUCGCGCCGCCUCCUCGGUCGACCCCGACCUGCGCCGUCGCCUCCCUCGGCUUCGCAAGGGUGAGAGCUACCCCGGCCACCCGUUCCCUUGCGCCGAAUCUCGCCGGAAUCCGCUCGCCGACGCGAACCCGACGCUUUCGGUCUUUGCCACGCCUCCAGCAACCAUCCAUCGUCGACUCCGUGGUCGCCGGACCUCGCCGUAUCCACUGUUGGCAUCGCAGCAGUGAGGAGAAGCCCGGCAGCCACCUCCGCGAAGACGCAAGCCAUCGGAGCACCGUCGUCACCGUGAAGCCGAUUUGUUCCAUCUUCAGCCGCGCCGUUCGUCGCCGUCCAUCGCCGCCUUCGUUCACCGUCGCCACCCUCGGGAUCGCAGGAGCGAGGUGAAGACCGUCCGCCCCUCGGUUGCUGCCUCUCGUCGCCGGAAAGCCGUCGCCAUCGUCAACCCAAGGUCGCUGCCUUUGGAGCUCGUCGCCUGCCAUCUCCCUCGCCGUCUGUCGUCACGUAUGUGGUGGCUUGGGGAAAGAACUUCAGGGUGUGACACUAUAUCAAGUGAUGAGGACAUCAAUACCGCCGAUACAUCCACGCUAACACAAGUCCAAGUUCAUGGUCCUAUUAUCCGUGCUCGCGCACGUCAACUCAACUAUCAGGAAUGAUGGAGAGGAUCAAAAGCAGAGUGGAUUCGCGUGGGCUGGAUUCGGACUGCAGAACAGCACCAACUUGUGACGAUCACCGUGACUUCAUGCGGACUCCAUUUUGAGCGUGCAAGUAUUUCAUAGAAAGCUUAUCAAGUCUACUUUUAAAUGGAUCUGGCCUCAUGUCCAUAUCUGUUCUGCAGAGGCUGCAAUUGUCAUUUUACUACAGAUACCUUUUUCUGUCCAUGGUGCCGCGUCACCUUAUUUGGGUCCAAUGUGCUGUUUAUCAAGUUGAGUCCGUUAAGGGCGCGUCUUAGGGUUAGAGGACGACCUCAACUUGUCCUCCCCCCUAUAUACCCUUAGCUAUCACACAUAAAUUCCGGUUUUGUUUAGAUCAAAGUUUUGCUUUGCUACUUUGCCAUGUAAUCCCGUGAUCGUGUAGAUCACCGGUUUGCUCGUUACGGAAACCCACCUGUGAUAUUUUUGUUGAUUCAAUCUUACAUCUUUAAUUUGCCAAUUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

382

LEP:

77.64%

ME_num:

102

MEP:

20.73%

HE_num:

7

HEP:

1.42%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.98

Avg Expression:

10.55

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day2.110820189186420.000177448508072834
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-2.410919374076570.000197989451661264
3Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day2.007608283692290.00263148151041713