Chr:
Chr3
Start:
35294169
End:
35295597
Strand:
-
Ref_name:
LOC112938206
Sequence
(XR_003241245.1):
CAAAACCCGAAUCCAAAAAGCAGAGUCGCCGCUUCCUCAUCCGCGACUCCGGCCAACGGUUGCGCUUGUAGGAGUAUAUCGCGUUCCCUUCCGCCGACGGCGAAACUCUCCGGCGCCCCCUCUCCUUCCGUUCCUCUUCGCCUCCUCCAUUAAUCGGCGUCAACCCACUUCUCCGCCGUGUGUGCGUACGUGCAGGAGCGACUGCUGUGGAGAGCGCGACUCCGGCCGCUGGCGUUGGAUGCGCGCGCAGUGCCUUCCGCGUGCGCCCGAUUUGCGUCGGCAGCGCCCACUUCGGAGGCCGCUCUGACGAAUUCCGGCGCCGCCUUCACGAUCCCCGUCCGCGUGCGGCCGAGACCUGCGGCGGCGCCAACCUCGGAGGCCGAUUCGUUCCAUUCCUGUGCAAGUCUCGUGCGCACGACGAGUACUGCGAAGAACAACCCUUGCCAUCACAUCCUCAGUAUCUGGGGGCGGACGCUCCAGGCAGUGAAGCUGGGACUGGGAGCAGCCGCCGGCGAAUGCUUCUCCAAGAGCACCAAGAUUCACAGAUCGUAGUGGUUCUGGAAAAAAAAAGUCCUAUAUGGCGAAUGUCUGAAGCUAGUGGUUGAUGGAAAACAACAGUCCUAUGUGUGAAGCUGGUGAGAAUAUUCAGAGAUGCUCGUGUAUAGAUUAUUAUCAGUUAGUACUCUGUUUGUGAUCUAUUUACUCCCUCCGUCCAAAAAAAAAAACUCAACCAAGGAAAGGAGUGUUUUUUGGGAUGGAUGGAGUAUUAUGCAAGGUAAGGGCUUGUUUAGUUGGUGAAAUAAAAAUUUUUGGAUGUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.75%
ME_num:
MEP:
73.37%
HE_num:
HEP:
4.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.72
Avg Expression:
3.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.52308806303911 | 0.0292872709191053 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.55001577072744 | 0.00255060474632502 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.63795657546143 | 0.00175711488623378 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.48603888459713 | 0.0404380852207735 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.40228882421431 | 0.0222471291341895 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.70497513430445 | 0.000783507815233652 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.29810679741126 | 0.00297626999601369 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.76740127096042 | 0.00678434601559646 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.0395797763162 | 0.00798528444634293 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.06409862426994 | 0.0213181840563757 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.36396896423873 | 0.0304950791661587 |