Chr:
Chr3
Start:
16321363
End:
16322572
Strand:
-
Ref_name:
LOC112938204
Sequence
(XR_003241243.1):
UCCGCACCUCGUCGCCCCCUCUGCCGCGUCGCUGCCACCAAGAACCACCGGCACGCCCUUCCUGCGCCGCGGCCGCACCACCUUCCCCGCGCCACCGCCCCCUUCCCCGCACAUUGGUGGAGAGUGCAGGAAGACUAGCGGCGGUGGAGAGAGAAGGGACGAGGGAGAGAGGCGGCGAGAGGUGGGAGGCGGAAGGACCACGCGCCGCAGCCCGAGAGCCGCCGCGUGCUCGUCUUCCAUCACAGUCGCUGCCGCGCGCUCGCCUUCCGUCGCCGUCGCCGCCACACACAGCUGCUUGAGCCGCCGCGCGCCACCGCCCGAGGACCAGAAUCGCCACCGGCGCUGCCACCGGAGCAGCUGCCGCCUGUGGAGAGGGAGGAGGAGGAAUGUGAGGAUAAGGAUGGAUUUCUCAUAUGAACGCCAGAAAAAAAAAUACCGUCAUGAAAAAUCGGUUUUCCAGUGAUAUUUGCAGCAUUAUUUGUCGUGGGCUGUACAAUAUGAGGAGGCAAUUAAGGGGAUUCAAUCGAGAUCCAAAGUGUCACUUUCGAUUCUCCAAGUUCAAGCAACCAUUUCAAUUGGAACCCAGCCACAUGGGCAUCUUAAUUGGCAACUCUAUCCUACGUUAAUUGGAUCAUAAUCCCUUCUACCAAAAUAAACCAUCAUCCUCCUGUAUAAUGUAACACAUCCUGAUACAAUAAAUAUAAAUAUAUAUUAUGUUUAGAUUCGUUGUAUUAAAAUAUAUUAUAUUAUAUAAGAGAUUGGUUUAUUUUAGAUGAGAGAGUACAAUUCUCACCGUACGGUAUUUAACGUACCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.86%
ME_num:
MEP:
33.94%
HE_num:
HEP:
11.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.81
Avg Expression:
5.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.24497767709791 | 0.002180230881079 |
| 2 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.39823692457019 | 0.00403837617876483 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.49293481040382 | 0.0182937584498062 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.87425423288991 | 0.0289640269065506 |