Chr:
Chr3
Start:
16169915
End:
16170906
Strand:
+
Ref_name:
LOC112938190
Sequence
(XR_003241227.1):
AACUUGAUUUCAGUCGCAAAUGUUGUGCAAUUAAGCAAGAGGAUCUACUAUUUAUUUAUGCCAAAGAAAGGGAGCUAAGCUUAGCUAGCUGCAAAGGAAGGAAGGAAGGCUACUGCAAGUAAUAGUAGAUCACUCUUUGGCUGCUGCGCUGCACUGCAAGUCUGCAACUACUAAAGCGGACAGAAGAAGAAGAAGAAGAAGAAGGUGAAGAAGAGGAGGAAGGAAGAAGGGUAGUAGAGAGGAGCAUGCAGUACAUGGCAUGAUUCUGCCUGUGGCUUUUAGUAGAGAAGAGUAAUUGAGCUCUUCUGCAUCUCCUCUCUCUGUCUGUCUCUCCUCCAUCCAAAGUCUGCAUGCAAGAACAUCUUCUUAUGAUGGCUCUUUCCCUCAGUGGAAGCCACACUGCCUCCUUCCAAAGCAAAGGUCCCAACUUUUGCUGUUGCAUGGGCAAGCUAAGGAGUACUGUGUAGCUUAGCUAUAGCUAGCUCUGCCUUGCAUUUGCAUUGCAUUGCACUUGUGGGAAAAGAAAGGGAGAAAGUUAUACUCCUUCCUAGUACAAUGGUGCUGUGUGUGUGUGUGUGUUUUCUCUCUUUAUUCCUCUCCUUUUGUAAUUUUGUUUUGCUCUUCUUGGAUCAGCCUGAAGCAUGUAUGCAUGCACAUGAGAUGUGUGAGUGAGAUCUACUGCUAGUAGUAGCAAACAAGAUAGAGAGAAAGAACCUCCUGUUCCAUGAAGAAUUUUUAUCUUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.76%
ME_num:
MEP:
39.84%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.83
Avg Expression:
3.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.48208592032067 | 0.0352800209861542 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.82865671482283 | 0.0481284684983416 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.4683512294664 | 0.00219162405831117 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.9900048343345 | 0.00878777585535972 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.78691043470613 | 0.0136121334093411 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.6592035339508 | 0.00134750199873502 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.28986541953255 | 5.64229182075818e-05 |