RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112938160

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

29598256

End:

29603091

Strand:

+

Ref_name:

LOC112938160

Sequence
(XR_003241146.1):

CAUGUCACACGAAAUAGUUAGCAAAGACAAGAAAUUGAUUAUGGUUCACAUAGGUAGACUAAUUCAAAAGAAAUCAGGAAAAACGUGUAGAUCUCUUCAGUAGUUAUUCAAAUUAAAUUAAGUAGACCAAAGAAUGCAGUCAGAUAAACGAUAAAUAUUUGAUUACAAGGGUGGACGAGAAUAACAUGUAAACUACAUAUUAGCUUUACAAUAUAUGUAGCUGGCGCUGUACCUAUCGAAAUCGACAAAACAGGCAACCUAUUUUGCUAUGAAUUCAAACGAGAGAAUUUAAGUUGCAGCAGAAAAUAUACAUAAGAACACUGUGCUUAACAAAAUCAGAUGAUGGUCUACGAAAAUGAAGAUACUGGCAACACAGUACUUGCUCUUAGAAUAGAAGUUUUUUUUUUGAACAGUCAUGCCGUUGCCUACAUUUUAUAUAAAGAAGAAGAAGGUGUCCCAUUUUAAGGAGACUCUUAUAAUAGAAUUUAUCCGCUGGUGUAAAAUGUCAGGUGAUAGUAACUUGUAAACUUUUCCUCACAUAAAUGGUAAGUAUCUUUCCUCAUUCUCUCGAGGGGAAAAAAGAAAAAAAAACUUAUUGUACAGGAGUAGUGUUAAGAAAACCCAUCCAUAAUAAGUUAGUGUUUGUAAAACAGCGUACAAAGCAAGCACACAAUAUUCUCAACACAUCCUUGUCUAGCCAUUAUCUACUCCCUCCGUCCCUAAAUAUAAGGGAUUUUGGUUGGAUGUGCGUCACAUCCAACCAAAAUCCCUUAUAUUUAGGGACAAAGGGAGUAUUCAAUAGCUAGAUCUUAAAAACAUUCUGACACAACGAAAUAAAAUGGUAAGACUAUGACCAGUUGAAUAUGCUUAUCUUUCAUCGUUAGAAUUUUUUUUUUCAGAAAAAGAACCAUUCAAUUACUUCCUCUGAUCAAAACCAUUUGCAAGCGCAAGAUUUCUUCAAACUCUUGAAAUUUCAACCAUCAACAAUUUCUCAAAUGCUUAUAUUCAAAACAAAAGAAAUGCUUUUUGUAGAUUUACCUCCAAAAGUAAAGUUAUAAUACCAUAAAUGUAUUAGAUUUGAUUAAGUUAUUCCAAUAUAAAAUUCAUUGUCGGAAUUUUAAAAGUUUAGACCAAAUCUUGUCCUAAACAUCAAAUAUUUAUGACCAAAGGAGUAGCAUCUGAAAAGAAUUACUCCCUCCAUUUCAAAUCACUUUUUCUAGCUUUGUUGUCCUAAGUCAAACAUUUUUAUCUUUUGACUAUUAUUUUCUAGAAAUUCAUAUGGUUUAACAUCAUUAGAAUUAUGUUUUCGGAUUCACCAUAAGAAAAUAUUUUCUCAACAUAUAUAAUUCGCAUGCUCUUAAACUACAAGAAUUUCUAAAAAAAAAAUUGAUGGUCAAAGAUAAAAAUGUUUGACUUAGGACAAACCUAGAACAACAACUAAUUUAAAACAGAGGGGGUAUAAAAUUAAUUAAACAAAAUAAUAACCAUGUUCAAGGAUAACAGAGCACUGCAUGAGAAAUGAACCCUACAAAUAACCAUAAGAGGACUAAUUCUGUUUUAGUGAAUUAUCAGGCAUAUUAGGUACAAGAAAUGCAGUAUAUAAAUCUCUUAAAUAAUGUCUUGGAUUAAAUAAUUACAACUGUCAAAGUGUAGUUAACCCUUUGCGCUCUUUUAGUGCAAAGAUGAGAUAGUUUCUCUGAUGUAAACAGUCCUGAUUGGGAUAAGAGUGUGAUGAGUACUACGAUAGUUCUACGACAAGUUUACUUAGCUUUAGUAAGGAAUAACAUUUUUUUCUUCCUGUGGAGUAAAUAUCAACUAAUUAUGCAAGGAUAAUACAGGUCCUAGCGAUAUCUAGGUCGACAGGCCUAUUAAAUUUUAUUCCAAGGCAAAAUAUAUAGAUUGAUUGCACUCAAAACAGUUUCAGUAGAGUUGUCAGGAAAAUAAUUUAGUACUUUUAAUUUAUUUACUACAUGCAAAGAACAAUGCUAAAUGUAGCGCUAAAUACUGUAAAAGGUCGUUUAUUUAGAGUGUAUGCACGUAGUUACUGAUGCCAUAAAUUGGCUAAAUUGGUGCAUUGGAUAAUCUGUGGUGCUAGUUUUUUUUUCUUUUUAUGUGUAGCAAGUCAAUAUCUCACCAGUAAACUGUUUAUCUUAAUGGUUAAUAUCUUAUAUAAGUAGUCUGUUCAUUUGAAAUUUUGUGGAGUCUGAUUCUAUGGUAUCAAUUUUGCUGUGAAAAUUCACAACUUUUUAAUUGUUUUUGUAGCUUGGGUGAACCGGGUAUUCUCUCCUCUACUACGCUAGAUUAAUUCGUACAUACAAGACUACUGAAAAUCAGCUGAUAUCCUAGAAAUGAGAAGAAGAUAACUUCGCUUUGGACACAAUGGUUGUUCAAUUGCCACCUGGCGAAGCCAGGUUCUACACCCAUCCUUACACUGGAACUUUUGCAGCCGUAAAUUUGGAGGUAUGUGUGUCUUUUUUUUGUAACGAUUUGCUUUAAAACAAUAUACUAGUAGCAUACUUGUGUAUGUUCAACAUUUCAGCACAAUUAUUUAUCAUUUAUUUAAAAAAUUCAUGUUUUAAAUAUUUAAUAUAUAUUUAGUUAUGAUCAAUUGCAACUCAUGGAUGAUGGUGCUAGCAUAUUCAUGUAAUCAUGCAUAUCGGUUACUUGCAUGAAGUUCUAAAACAUAAGGCCACAUUAGGGGGGAAACAAGGAUCAAUAAAUGAAGGGUUAGACGAUUUUCCCCACAUUUGUUCCCAACUUGUGAAGAAUUACUGCUUAUGUAAGGAGCAGAGAACAUUGGUUUACUCUGCAAAAUGAAGAAAAACAGGGAAAGAUAAUACAGAAGCUAAUUUUGACUCAGGCAUUCUUGGUCGGACUCCCUGUAAAACAUCUAUAAAAAGGUCAGACACAUCCAAAUAUUCACAGGAGCAAGACAAUUAUUUCAUGUAACCCACGGGAAAAUUUUCAAAAAUGACAAUAUGAGUCAUGGGUAAAUUCUACCACAGCACAUCUUGUAUUGUGUAGCACAAAAUAUUGCACUUCUAUAAGACUUUAUUUGGUCAAUAUAACAUGAAUCAUGUAUAAAAAUAAUGCGCAACUUAAUUUUUCAUAAAUAAAUAAGAAACAUUAGUAUCUAUGCGAAAAUAAUGCCAAGGAAAAAACAGAACAAUCAACUGGGAGAGGUAGCCGAAUCACUGCCUAAAUAGUUCCUUUGUGUUCACUAAAUAGAUGAAAAUAUAUAUUAUUGAAUAUAGCAGCUUUACAUUAAAAAAGGAAAAAGAAAAGCAAGAGAGUGUUCUAGGAGCUGCACUCGCAUGCAAACAAAAUAUUGAUGGAAUGCAUCAUGCAAGUUGCAAUAUUUGUAGGAUUUUUAAGACUCAAUUUUGAAGAACUAAGUUAAUUAAAGAGAUAUUUUUGUUUUAACUUGCAUUAACCAAAAACUACAGCUAAUAAAAUUAAGAGCAGAAGCAAACGAAGAGGACCUUCAUUACCCAGCAGAACCUCAGACUAAAUGUACAGAAGAUGUCUGACACAUCAAGAAAAAGGAAUGCCAGACACAGAAACUCCGGAAUUUAGAAAUGGAAGAACCAACACUAUCGAUUUGGCAAUCACAAAAAGACAUGAGGGGAACAAUUAUCAUCCAAAAAAUUUUUGUUAACUCAAUUUGUCGAGUCAUACUACUGUCCUCCAGUUGCAUGCAUUGUCUUUUCUAGUGACGUACGUUCCAUUGCAAAAUCAGUCAGCUCUUUUCCAUCCCAUUGUUUUCUUUUGUUUGCUUUUUAGCAAGCAAAGUUUCAGUAUCUCUUUUGGUGUUGCCUCGAGACAAACGGAAACUCGUGAUAUCUGUGUCCCCUGCUUUUGCAUGGCCUUGAAAGAAUGCAUGCAACGAAGAAUCUUGGAGUACAUCAGGUGCAACAUCAGUCAGAAAAAUGCAGUGUUGUUUUGUGAUUAAAAUCAAGCUAUGGUCCUAAACACAAUUAGGAAUGAUCACCUGCAACCUUGACCGGGUGAUAUUCAGGUUGCCUCGUGAAUCAGGUAAGCCAGUCAUAUUUUUUGGAAAAGAGAACGCAUAUAGAGUAGAUGUGCGUCUACCUAGGUCCAAGUAGUAGGACAAAGAACAAUUGAACCUGAGAAGAAAUGAGUUGACAGCUGAAAAAUACAGACGCAUUUGAACUCGGACUAGCCUUGGAAAGCAUCCAAUGUUUCUUGACCGCCAUUACAUCUAUGAGAGAGAAUGAAGAGAACUAGAAGAAGACUGGCAAAAAAUACACGAGUAGUACUCUAUAGUGGAGUAUAUAAUACUGGUACUACUAGUAUAGCCAAGGAGAUCACCCAAAAUAUUGCAAGGAGAUCUCACAUCAAAUAAUAGGCUAUGCUCUUGCUUAACUGUAUCUUUCUCGAGGCUAGCUCUGACCGUUCUGUCCAUGCGACUUCACUGGUCAGAAAACACAGAAUACCAAGUCAUGGAGUAUACUGCUGUACAUUGGAUUUCUACACAAGACUGACCUACUGUAUAGUAUACUAUCCCAUUUACUCAUCUGUCUACCUACUACGUAUAUAGUAGAGUGUGUAGGAAUACAUCUAUCUGACCAUUGGAUUUCUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

397

LEP:

80.69%

ME_num:

94

MEP:

19.11%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.90

Avg Expression:

2.57

Tip: OSA-LNC112938160 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-5.341850793755387.60168815105568e-24
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-5.142723151259732.74397398018629e-12
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-5.591594404064249.86397199922109e-15
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-8.933902117171256.72517726455129e-13
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA-1.598243830210131.87470290235918e-08
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.807747542605271.57707946974808e-09
7IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h-1.383180385084730.000721705318107273
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-5.786908896516676.28220352681674e-21
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.216825003672964.94828453829326e-06
10Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.951570872101418.20550045187426e-08
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.654304847008271.779251802548e-12
12Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN-1.351812818428251.91109099757391e-06