Chr:
Chr3
Start:
25844744
End:
25845457
Strand:
-
Ref_name:
LOC112938159
Sequence
(XR_003241144.1):
GCCAGCUGCGCCUGCAGCGCCUCCACCUGCUGCUGCAGCGACGAGAUGGCGCCGACGCAGCCGUAGAUCGGGUCCCUCACCCGCGCGUUCGCCUCGUACACCAGGCUGCUCACGGCGUCCCCCCUGUGCUGCACCGGCACCAGUACAUGACAAGGUAGAAGAAACGUCCAUUCCCACCUGACAAUCGUGCAAGCACACACACAGUGAGCCAGUGACAUUGUGACAAGGCUACUAGGAGGCUAGGGCCAAGGAGAAGAAAUUGAGAAAAGAUGGUGGCGAUUUGGGGGUGUCUCUCUGGUUCCAAGAAAAGGGAAUGGAAGGAAGGAUUUUUAGGGACAUUUUUGCAUGUUUGGUGCAGCCGAAAGCUUUUUUUCUUUUUCUUUUUACGCAGCAUGUGCGAGCCUUGUGUGAAGGUGACUGCCCAAGGCUGCUGAGACUGUGAGGACGAGGCCGUAUACCACCACUGAUGGGCUACUGUUUCAGGCGGCUCGACACAUGGGGGAGGGUUCAGUUUGGAGAUCACUAUGCUGAGGUCUCUGUCGAUUUAAUUAGUACUACAACACACUGCAGUACUCGAACUUGCUCACAAAAAAAAAAGCAAUCUUUUCUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.28%
ME_num:
MEP:
32.11%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.86
Avg Expression:
2.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.87204701277514 | 0.046837490267664 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.92241207843289 | 0.0376106810140478 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.70470688026435 | 0.0426330093890356 |