Chr:
Chr2
Start:
1930025
End:
1930859
Strand:
-
Ref_name:
LOC112938001
Sequence
(XR_003241038.1):
ACCGCAUGUGGUAUGCAGAGUUUCCUACACUUUUAGCUGAGUUGCAGUUAGCUCUGUUCCUGGUUGGUCGACUUGAAGAACUGGAAUUGGAGAAGAACUUUAUGAACAGAAAACCAAUGCGACCCAAAGUGUCAAGCCAUGAAUCUUACUCGGAGCAGCACUGACAAGGAUGAGGUCACAAAGGCGUGCCUCUGGAAGGAUGAUUCAUGAGUUGAGAUGCAGAGAAAAACAAAAACUAACCUGGUAAUUUUGGAUGCUUGUUCCUGGAUAUGUUAGUGAAGUUGAUAGCUCAAGCCCUUUGAGUUCCAGGUCUUAGUACGUUCUACUGUAUGUUCCCUGUUCAGGAUGAAAUGUAUGUUGCACUUUAUUUGCCCUGAGUUGCAGUCCUGUUAACAUGAGGAUGCCAAAUGGCAUGAUGUUGAUAAUAACUUGGAUGCUGAGUGAUCCUCCAAGUACAAGAAACUUCUUGGUUCGGCACUAGUUCAAAGGGUGGUGGUAGUUCAUAUCUUUGCAAAUCCUUGUUGCUGUUGUCAGGAUUGGUUUUGUUUAGCUUUCUGAAUUUUCAAUCAUUGACAAUCUUUAGCUAUUAUUUGCAAGAAAUGCCAUGUUACCAUGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.88%
ME_num:
MEP:
55.08%
HE_num:
HEP:
14.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.94
Avg Expression:
30.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.4821246006404 | 7.57819041660108e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.58961300042354 | 9.70838370767157e-13 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.42132044993695 | 5.62096326574858e-13 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.50233854543432 | 3.27840402960209e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.17542361379299 | 7.96719933677421e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.44747549406114 | 1.11797678714597e-09 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.25924390019456 | 8.94376807134171e-14 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.12647623932542 | 0.0480703508186326 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -3.46602379842188 | 0.00105760710859046 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.95855108021889 | 7.62132337813321e-09 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.68044487614545 | 0.0316789073883107 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.06769329680828 | 0.00519123435497966 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.31733261024898 | 0.00197128288303782 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.36560098607572 | 1.53171163146568e-12 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.44878678518081 | 2.29501136511307e-15 |
| 16 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.00516410284161 | 0.0365170272627102 |
| 17 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.00506314036215 | 0.0370137275068087 |
| 18 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.00495323341889 | 0.0366384776838023 |
| 19 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.10310359750905 | 0.00153319587267063 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -8.29850142132016 | 7.00517815699487e-11 |
| 21 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.30781405349509 | 0.0243045611163655 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.17995492695326 | 8.28703409783244e-18 |