Chr:
Chr2
Start:
30712085
End:
30714328
Strand:
+
Ref_name:
LOC112937982
Sequence
(XR_003241018.1):
UCGCCAUAUCGAUCCACAUGCCCAAUCCUGAUACGAUGCCACUACGGUCUCACCUGCACUACAACACCUGUGCACCUCCACACACCGCGCAAUCGUGCAUGCCUCCGUCUAGUCGUGAUCGGACAAAGAGAGUUGACAGGAAAAAAAAAAAGGCAAAAGCCAGCGAGCGCGGUGCGACGGCGCAUGCAUGCACCCGCGCGCGCGGCCCGCCGCGCGAUGGCCCGCAUCGCAUAUACAUCGGCGGAUUCGCGGCUCGCCAUCCCGUCGGCAAGCUUGGUGACGACGCCUCCUCCACGCGCACACGCGCGCGAUCUGCCCGAUCUGGUGCGUGGGUGUGCACUUGCGAUGGAUGGCGACUUUGCCUUGGCUUCGCCAUAGGCUCGGCCGUUUCUGUUGGCAUUGCCUACGAUCGAGAGCGGUGGCUUCAAGCCACGACGCGCGUACGUCGUGUGCGUAUCGAUCCAGCCAGCCUUCACUACUUGCCCAUGCCUUUCUGGUGCCUCACCAACUCGACACAGCCUCUGACAAGUGGCUAUCUCGAUAGCCGGCUCGCACUGUGCUACUGCCUACUACUCCUAGCUCGCAUAGGAUUCCUCGGCGACGGCGGCGUGCGGUUGCAAGCAAAGCUCUCGGUUCAUGGCGAACAACUCCAACUGCUGCGGGUUCAUGGCGAACAACUCCAACUGCUGCGGGUUCAUGGCGACGUACACCUUUUUCUCGAUAGCUCGUUCGUGCUUGGCUGUCGCUGUUGCAGUUUCUGCUACUCCAAGAAGAGAGAGGCCCUUGCAUCAAGCUUGGAAUCCUAAACCGGGCAGCGAAGCAAGCAACAAUCAACAAUUAAGAAGUGCAUGCACGCUGGCUGUUCAGAGGCUGAUGAGCUGGGUGCAAAGUUAAAGAUUUGUCAGUGGGACUCACCUGCGGCGCUGACAGGCCUCGCGUACCAACAAAACUUUUGUGGUGAUCUUCCCGGUAACCAUGCUCAGCUCAGACUGGUGGAUUAUUUUUCUUGCUCUGUUGCCUUGUUGGUCGCUGUUUCUGAAAGUUGUAUAGAAAUCUAUCCAUACAUCUAUUUUUUUUUACUAAUUCACCGGGGGAGAGUUUCCCCACCUGAAUAUAUUGCAUCAAACGAAAGUACACAGGGCAGGUUUCACCCGCACAAGCGCAAGAAUCCUAGAAGAUAGUAGCAGAAGAUACACGGGGAGUACAAAGAAGAUAAUACAAAAGAGAGGCGACCCUCCGAAGAUGAGAGUAGGGACCGGGUGCAAGCACAAGUUCACAUGAUUUUUAGCAGCUAGUGGCAUGAACAAAAGUGGGGUUUUCUUUCCUCCAUCCAUCAUAUGGAGGAGUUGGCUGGCCACUAGCCGGUGCCUUUUGAUGGCGAAGUGGUCACUCCUCAGUAGAAACUUUCUCCAGCUGGUCACUCCUCAGUAUGCAGACAAGCAAAGCUUCAGAAAACACUUCAUGUUGCUUGGUAAUGAGCUUAUAUGUGACAGUAAUACAACAUGGGCAUCCGGCGUCAUUGUGGCCUUCAAACACAAGCAUAUCAUGUGUGGUGUCUCCAUCAUCUGUUCUUUUGUGUAAAUUAUCCCCUGCUUUGGACCCCAAGCAUCCGAUUUAUUUUAUUAGGGGGGGAAUUAUGUGGUUUGUGAUGUCACUAAAUCACUAAUGACUGGAAUGUGGUGCCAUCUGUCCUCUUGGCUUUGACUUCUCCAUGUGGCUAGGUUGCACCAUCUCAAUGGGCCCAUGCAAUCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.5%
ME_num:
MEP:
6.1%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
1.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.26233715280973 | 0.0053181630106793 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.33690040093005 | 0.00235522774441041 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.48451368208993 | 0.0268314380791055 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.25294337141446 | 0.0216772867314002 |