RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937979

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

11223733

End:

11225985

Strand:

-

Ref_name:

LOC112937979

Sequence
(XR_003241009.1):

AGAGCGACGCCUCGUCAAUCCAACCGCGCCAGCGCCAGCGCCGCACAUCUCCCCGACUCCCUUUUUUUUCGUUUUUUUUUUCUUUCUUUUUACAAACGCGAUACGACGUCUGUGUGAGUCUGUUCGUCUCCUCUCGCCAUCACUCGCCGGGACACCGUGGCGUCUACUCCUGCCGCUCAGCGCCUUGUCGAGAUCGUCCCGUCCUGGCCAGCAAACUGCCGCUGCUGUUGGUCGCCCUAGCUAGCCGCCGGCAGCACCGCAGCACUGCAGGUCUGCAACGGCACGGCGGCAGCGCCCAGCGGGCAGCCGGAGUACUACUACUACAGCCUACAGGCAACCAGCAACCUGCAGCCGAGCAAGCAAACUGCAUUGCACAAGCAGUCAAGCACAAGCAAGAGACUAAAGAGUAAAAGAUAGAUUUAAUGAUUUAUAUAAGCUAGGGAAGAACUGAAAGUUUCUCUGGAAGGGACAAGGACAUCUGUUGUCCUGUAGUCAUCAGUCCAUCAAGGCAUCAACCAUCACUUAGUAAAAUUGUUAUAGACAAGUACCUUGAGGAAAGCGCUCGAUAGUUCCAAUAAUGCAGCUGUACGGAAUUCUUGUCCAGAACAAGUCGAUGAUGGUAGUUGGGAGAACGAGAUUGAAUAUGAUCCAGGCUUGAGAAAAGAGAUUGAUGAUUACCAUCCUAGUAAGAGGGAUAUAGUCAGAAGGAAAUACUUGCAGAAAGGGCCUUGCCAACCAUGUCUAUUCACUUUUCCGGUUACAAAGAUCUCAGGUAAAGACAGAAAGUUUAUUGAGGAAUGGUUUGAUGAAUUUGGAAGUUGGCUUGAAUAUAACAAGGCAAAAGACAGAGAAUGUUGUUUUAGAGAUCGCAAUAAGAAAGAGGAUGGGUAUAAAGCCUUUGUGGUUGAUGGUUGGAAUGGUUGGCAUAGAAAAAGUAGGCUAAAAGAGCAUGUUAGUGGUGUUGGUAGCUUACAUAAUCAAGCCAUGAAAAAUUGUGAUGCUUUGUUGCAAAGAGCCCAACACAUCGAUAUACAUAUGCAAGUGCAAAGCGAAGCUACUAAAAAUGCAUAUUUUGUUCGAUUAAAUGGAUCAAUUAAUGUUGCUAGGAGGUUGUUAAGCUAGGUUUGCCUUUUCGGGGCCAUGAUGAAUCAAGUGAUUCAUACAACAAAGGCAAUUUCUUAGAGUUUCGUGAUUUCUUAGCAGAGCAUGAUGUUGCUUUAGGCAAGGUAGUGGAGAAAAAAAUGCAUCGAAGAAUUGUCUUAUGAUAGCUCCUGAGAUUCAAAAGGAUAUUGUUGACUGCUUUGCCAAAGAAAUAUUACAUUCCAUUUUGGAAGAACUUGGCCAUGAUGUGUUUUGCUUGCUAAUUGAUGAGUCAAUAGAUAGUUCUUGUAAAGAGCAAAUGGCCGUGGUGUUGAGGUACGUUGAUAAAUGUGGAAUUGUGAAAGAAAGGUUUGUUGCUGUUGUUCAUGUGAGGGAAACAACGGCCUCAUACCUCAAGGCUUCUAUUGAUGCUCUAAUGGCAGAUUUUAAUCUAAGCUUGAGUCAAGUAAGAGGCCAAGGAUAUGAUGGGGCUAGUAAUAUGCGAGGUGAAUAUAAUGGGCUACAAUCACUAGUCAUGAGAGAGUACUUCAGCUUAUUAUGUCCAUUGCUUCGCCCACCAACUUCAGUUAGUAGUUGUGGCUAUUGUGAGUAUGAUUUCUACCUUGUUAAAUGUGGUUGGUGGUUCAGCUAAGAGACAGGACAUGGUUAGAGACAUCAAUGAUGAGCAUGUGAGCAAAGCAUUAGGUUGUGGGCUACUUCAAAGUGGAAAAGGGUUGAACCAAGAGCAAUGUCUUCAAAGGCCAUGAGAUACUCGUUGGAGUUCUCCUUACAAAACUCUCAAAAUUUUGGUAGAUAUGUUCCCAACAAUUGUUGAAGUGUUAGAAUUUGUAGAAGAGGAUGAUAGGGAUAGAGCAAACAGAGAUCAAGCGGCGGGUCUUUUAGUAUAUUUCUAGUCUUUUGACUUUGUCUUUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

475

LEP:

96.54%

ME_num:

16

MEP:

3.25%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.98

Avg Expression:

1.04

Tip: OSA-LNC112937979 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-4.532926318899870.0351280817261901
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.243398854114720.0460813010737778
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-4.840975985259140.019544446893126