RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937976

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

15206481

End:

15213231

Strand:

+

Ref_name:

LOC112937976

Sequence
(XR_003241007.1):

CCUCCUCCUCCACCCGCGAAGACAUCACCCCACGCGCGAAUACUUCGCUUCUCCAGUUCUCCUCCUCCUCGCUCGCUUGCUCCUCCUCCCCGCAUGUUCUACCGCCGCGCCGCUGCAUCCUCUCUGGAGAUCUUCCCCGCGUGGACUGCCGCCGCCAGAGCCUCUGAUUCUUCCCCGUCGCCGGAGCCAGUGCUUCUUCCCCGCGUGGAUUGUCGCCGCAUCCCCGCCGCCGGCGCCGCUGAUUCUUCCCCAUCGCCGGAGCCGGUGUUUCUUCCCCGCGUAGACUGUCGCCGCAUCCCCGCUGCCGGAGCCGCUGCUUCUUCCCUGCCGCCGGAGCCGCCGUGGCCGGUUCCGACCUCAACUCCAUCCGCCGGCGCCGGCGCCUAGAUCCACUGCCGCGGCCGAAGCCGACUUUCCACCGCUUCCUUGAGACGUUCAACGAGAGAGACGACUGCCGGUGCGACACUUCAACAUUAUGCUCUACCACAACGCUACAGAGUACAGACCAGGUCUUCCAAAUUACACAUAGUUCAUUAUGCUUGGGACAGAAUAAUACAAUAGUUGAUAUAAAUGUGCAGAAAAAACUGAAAGAAAUUUCAGAUUGCUUAAUAUUUUGAUGUGAGUUUAUCACGGGUGCAUAUUGGAGUGACUGAACAAUGAUUCUCAUUGGUAAUCAUUUUCUCCUACCUUCUACUUCCUUCAGUUUCUCAUAUUCCUUUUUUACGAAUUAUAUACCUCCGUAUUUAAACAGCUUUUUAUAUAUUUGUUUUCUAUAAAUAUUAAAUGAUAAUUACUCAUUUUUCAUUUUUUUUCGUGGUGGUACACUAUGAGAAUUUUCCGAAAUACUAUGUCCUGCCACAUGGUUGCUGAAUACAUUCAAGGGCAUUGCACUGUCCAUUCCAUUCAGUACUGGGCAUAUGCAUUACAUUAGGCACACACAGGAGAAACAUGCCAUAGAUUAAGUCAUAGAGUUCUGCCUUCAAAUUUGGAAAGAAAAAGAUAUUCAGAGUGGCUUCAGCCUUCAGGUAAUGUUACGCAAGCGGACAAUAAUGUUGUUAUUAAUUUGAUAUAUUUUUAAGUGCUAUAGAAAUCGAUGAAACUAAUUCAGGUUUUGUAGACAGCUUGGUGAUCAAGGCCUACCAAUAUUUAAUGAGUUAUGUCCCUUGAUUGAUACACUAAAGCUUAUUCUCAUAGGCAAUUUUGAUCUAGCAAAAUAUGUGUGCAAUGGGUGCAAGUAAUAGAAGCUGCAAGGCAUAUUAUGAACAAUCAAAUUGUUUCUGAACUGAAGUAGCAGGUUUAAUUUUGGUCAGGUAUUUAAUACAGACCAAAUUUAUAGUGGUAAGAAGUAACGAGAAAUGCCCGUGCGUUGCACCGGGUAUUGGUGGGGUGGCUGAAGUUUGAUAUUAACGACUUAUCAAAAGCACACGAGAUGAUUAUAAGUACAAUGAUAAAAAGGUCAUGUUUGUUUUUGAUAAUUAAUUUACUCUAUAUUUGGACGACUUAGAUGACGCUUCUGACGUGUGUGGGCUUGAUGGUCAUGGCAAGGGAGGAAUGAGUGGCGAACAAUUAAUGUGUCUCCUUUUGCAUAUAGGGCGACAUAUGGAAAUUUAUGUGAUGAAAAAUGAAUGGAAUUGACCUAAAGGCACCUCCCCAGAUUUAUAUUUCCCCAUAUUUAUAUUUGUAGUUUAAUUAAACUUUCUUCAGCAUUUAUUUAAUAGAGUUGUAACCGAACCAAGGGAUUUCUUGAGAUUCUUAAGUUAUCAAUGGUGAGAUUCUGUCAGGUGACUUCUAACCUUGAAUUUGUUUCAGAAGUCACCAGAUUGUUUAACACGCUAGAUGCUAUCUCACUGCAAGAUCCUGCCUUUUUUUUUAUCUGAAGUUAUACUGAGCUGCUACCUCCUCAGGCUUCAUUCUGUCCCCGUCCGCACCUUCCUCGAUGAUGAUAACCCUACCGCAAGGGUGACAUGAGAAUUAGUUUAUCACCCCGGUCGAAGGUAGCUAACUGCGUGGAAAUUGGUCUUCCGUCACUCAUUCGCAAAAAUAAAAGAGAAGCGUCUCCAUUGCUUCUGAAUUCUGGUGCCUUGCAUUUGAUUUAACCUCAGGAUAAAAAGAGUCUUGGGAUAUAUGGCUUCUUUACUUUACGGAUUGCUCUUCCUGCCCAAUAAAUGUAUUUUGCAGCCUUCAAGCAGAUAAGGAUCAUGGAGGCUCUCCAAAUGAUAUAUGCUUCUGUUCAUAAUCUGCUUGUGGGUUACUGUUUCUGUUGACACGGAUAAUUAGUCCAUCUCUGUAGUCACAGAUGACAACUUUUUUCCCUUCAAUGCAGCCACAUUUUUGUGAUGCUUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

382

LEP:

77.64%

ME_num:

109

MEP:

22.15%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.84

Avg Expression:

1.53

Tip: OSA-LNC112937976 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-3.041266345698713.24896942886601e-07