Chr:
Chr2
Start:
3763235
End:
3768537
Strand:
+
Ref_name:
LOC112937971
Sequence
(XR_003240963.1):
UGCGCAGUGGCCCCUCCAGUGUUUUCAAGUUGAUGUAGAUAGUAAUAUGUGCAACACUGCAACAUCCUAGAUUUGAUAGGUAGGUUAGCUGGCGGAUGUCUCAUCCCUGAGAAUUAGGGGUUUGAUUCUACUUAUUCUUUUUUUUUCCUUUUAGGACGUACAUAGAUUAUUUAUUUUAUUUUCACGCUACUAAUAUUUUCUUGUCGACAUUAUACUAUAUUUUACACUUUUUACUAAAACGUUUACAUUUUUAAAUACCUGUCCUAUAGUAAGAGAAACUUUGUUUUAACUUUUGAUAUUUUGAACACUCUUUACAUGCUUAUAUAAUGUUUCCCCUCUUAAGUUUAUGUCAAGCUCCACCACGGUUGUUGCUAUUGAUGUUGUUUGUCGGAGAAGUGGGAACAAGGGUUUUCACUUUAUCAUAUGCUUGGGUCACUAUGAGCCCCACUUUGUCUCAAGGGGAAGAUGGCGCACGGCAUCAACCUUUGCCCCAAGCUCACGAAGAUGACCUGAGGAAGACAACAGCCCGUGGACAAGUCCUUCAGACCCCGGGGCUGAAACGUCUAACCUGGGUGGAUUAGGGCCCCGAGCCCCCGAGGAUAGCAGCAGGACUCGAGGUCUCCCCGAAGGAAUCUGGCCCAUUAAGAGGAUUUGACUAGGUCUUGUGCGUUAUUUUAUCCUAUCAUUUUGCAUUAAUUACGGGGUGAUACAAAUCUUGUGAGCUUAUCAUAGGCGACAUAGGAGAUGUGGUUGUGCAUGCUGCCUCUCACGCGCCCACGUCACCUUGGAGAAAAAGGUUUGCGAUGUGCCACGCCCUCAACUAUCACCCCAAGCCCUCCCUGUCAGCUUCGGUGGUUGAUAGGUGGGCCUAGGGACAAAUAAGAUGAAGACUUUGCGGCCUUGCUCCAGAUGUUAGCUAGUAGGUGAGCCCAUUCCAUCCGACCGGCCUACUUGGAGGGACAGCGACAAGACCAAGCAAACCAACCCUUGUGUAUUGGGUCCCUCUUUCAUAUGCAUGCAUGGGCAUUGUGGAUAGGCCUGCUAAUAGGUUGGGUGGGAAUUGGUAUAAUGGAUUGGUUUUCAUUUUGGGUAGAAAUGGUCUAACGAAGCUGUUGGGUUGGGGCAGUUUGGACUUUGCUGAAAGUGGAUUGGAUCGAUCUGGUUUUCGGUCAUAUACCUUUGGGUCCAAAAUGGGUUCAACCCAUGGAUUUUCAUUGAAUCGUCCCCAAAUCCUCUAUGCUAGCUUGAUGGACACACUCAUCUUCCUCGUGAGCACAAGGAUGCCCAAGGCAUGCCCGUCGGCAUGCGUCGUCGUCGAUUCGGGCUUGGACGCCAUGCGCGUUAACUUCAAGCACCUUUCAACCAUGAGGUAGUUCGAGGACCUCGCGGCGAAAAUCUUAGGGAGAAAGGAGAUGGUGCGUUCGUAGGAGAUCUUCGUUGGCGACAAGUACAAGCAGCAAUAGUCCGCCGCCACACUCGCUUUCCUCAUGGAUGCAACUAGGUCGACUAUGACGAACAUCCGAGAAAGGAGAGCAUCGACUAUGACGACAUCCGAGAAGUAGCCUCGAGCGGCCAGAAAUCAUCUAUUUGCUGGGAAUCAGGCGCCGGCAAGGACAACUCCUCGAAGAUCUACCACUUGGUGCGUCAUCCACAAGACGACCAAUCACUCUUUUACGGACUGCAAGGUGGUGCAACACGUGAGAGCUGAACUCGAAGCCUGCAAGGAACGGGGUAUUCAGCGUGCUUCACCAACCAAGACCACCUGGUGUCUGAUCCAUAAGUCAAGACUCAAGAGGACAUGAGCUCUUAGGCUGCAAAGUCUUCCUUGACGCCACCAAACCUCCACGCCCUCAGAUCCAAGAACGACGAGUUCAAACUCGAAGCGUUGCAUAGGAACAGAGCCCAGGGAGCUCCUGACCGUUUCGGGAUUCAUUGGUAUGGACCCCCACGAGGCCUCGGUUUUACAUAGCUUGGAGGAUCUAGAGUCCUCGGCACCUAAUACUCUACGAAAGGUGAACGUAAUCGAGGGAGUAGUCCGAGUAAUCAAAAUCCAACUGCUCGGGCGACCACAGAUCCCAUCUGUACUCCCGCCAAGCAUUUGAACACAAUCAACUCAAUAUUAAGAUAGAGCCCUUUUGAUCCGGUCAUGUUCCCUGAUGGCGGGUCGAACGACUACGAUCCACAAUGGUGAAUCUCAAUAGUGCUUUUGCGGCGGCGACUGGACCUCCGGCUCAAGAUCCUCCUCAACUCCCAGCUCGAGGAGAAGAGGUGCACGUCGACGGCAGUGUCGAAGAAGACCCCAACGAACAUUCGAGCUGAGAUCCUGGUCGUAACCUCCCAAUACCUCACCUCGAGGACCUCGUCAGGGGACCCCACCCCUCAAGAUAAUCGCGAUUUACGUGACCACUUGAACGGGCGCCGACGGGAACGACGAGAACAAGACAACGCUCACCGACAUCAGCGCCGUUCACCUCGACGCAAUAAUGACGACAACCGAGCGUUCACUCCAACAUUGCGAGAAAUACGGUGGAUCGAAAAAUUCUAACCAGGAGCGAUGGAAGCACCGUCCCUGAGGAAUUCCUCCAUGUUUAUUCCACGGUUCUUUACGCUGCUGGAGCAGAUGACAAUGCGCUCGCAAACUACUUGUCGUCUGUGUUGAAAGGAUCUGCUCGAUCAUGGCUAGUUCAUCUCCUACCCUGCUCGAUCUCAGUUCGUCGCCAACUUUCAGGGUACAUACAAGUGCCACGCGAUCGAGGAAGACCUUCACAAUUUAACUCAACCCAGGUGAAUGUUUGAGGGACUAUAUUCGGCGGUUCAAUGAAUAUAGAAAUCUGUCUCAAAGGAAUCUGCCCCAUUAAGGGGAUUUGACUAGGUCAUGCGCAUUACUUUACCCCACCAUUUCACAUUAAUUGCGGGGUGAUAUGAAUAUUGAUAGCAGACCACAUACAAUGUGAGAAACGUGGCCAUGCAUGCUACCUCUCACACGCCCACGUCUUCCUGGAGAAAAAGGUGUGCGACGUGGCACGCCCUCAACUAUCACCCCACUACCCCCUCCCCCUUUGUUAGCUUUGGUGGCUAAUAGGUAGGCUGAUGGACAACUAAGAUGAAGACUUUUGCAGCCCUGCUCCACAUGUCAGCCGUUUGGUAAGCCCGUCCCAUCUGACCAGCCUACUUGGAGGGACAGUGACAAGACUAAGCAUAACAACCCCUAUGUACUGGGUCCCACUUCCGCAUGCAUGCAUGGGGAGGAUCCAUGUCUCUGAGAAAAAAAAAAGUUCGACUCCCUGGAGUAGACUAAGUUCAUACACUCCCACUUAGCACAUUCCCCCUACACCUGUUGUAAAUCUUGUUCAUCAUCACAUAGAGUAAGAACAUAAGAGUAGGGUAUUACGCUUCUCAGCCCGAACCUAUAUAAACCACCUGUCCCACCUUCUUUCUCUUGCAUCCUGGCCACAAGCUUAGAACCUGCACCUUGGCCGAACUCUGAAGGGAAGGUAUCUUGCAUUCCCACUAGAGGAGCUCCGUGCUCCGACACGUUGUCUAGAAGAGGGAUGAGAUAGCGCCAUUAGCCUGAUAACAGUUUGCUCAUUGAGCUUUUUUCAUUUUUUCCCCUGUGUUGUUGCUAUUUGUAAAGAGAUCUUUUACAGUGUUUGCGAGGUACUUGGAGGUGGAACAACGUGAACCAUUGAUAAGAGAGGGGCAAGGUACGGAACAAAAAUAUUGUAACAUGAUGGCAGUGGAGUAAUUAACUUGUAAAACAUGGGCAUUAUACGUUAAUUGAAUACUAACAUCCAUCUGUCAGUAUUCAGAUCGGUAAGUCAGUAUCCAGAUCGGUAAGCCAUCAGAGAAAAGAGUAAAUCACGGAUAUCAAUCCGAUUGAUCCGUAACAGAUCGCAUCUCCAUUCUUCUUUCCCUUGGGUUCGUUCUUGUUCUAGGGUUUGGAUGUUUCACUGGAAGGAGACAGGUUCGCCAAAAGGAGACAGAGAGAAAAGUUUUGGCAUGGUUGAGGGUUGAAGAGGAGACUAGAUCGCCUGGUCAACGUCAACCUAACGCAUCGUGUUUUAACGGGUGUACCCACGAGGAGACACGGUUGAGGAAGAAGCUCUGGUAUGGUUGAGCGUUUGAACAGGAGGCAAGAUCUAAUUGACAUGUACAGGGUUUGAAUAGGUGAACUUGCUUGGUGACAUAAUUGAGGGAGAAGCAUUGGCACUGUCUUGUGUUUGAAUAUGAGACAUAAUCUGAUUGACACGUACGUAACAAGUGCAUAGGUUUUAAGCUCUGAUGGAGGAUACAGGGAUAUCGGUUGAGGAAUUGUUGGAGUACCAACAAAUUGUCAGCAAGACAUUCAAUAGUGAGGAUGAAGGAAUUCACUUCUACAACAAGUACGCUUGGGAUAAAGGCUUUAGCAUAAGAAAAUCAUAUGCUGAAAGAAGAAAUGCCGCAAAAGAGGUCAAACGGAAAAGAACCUAUGACCUUUUGUUGUAAAAAGGCUGUUGUUGAUGAAGUUUGUCUGACAUAUUUAUCUAGCGGGUAUGAUAUUGGUGUUUGUGAGCAUGCUCACCAUGAGUCAGACUACUUGUGUUGAUAUGUUGUUGGUUAACUUGACAUAGCAUGUUCAAUUGGAGGCAAGUAUCAUAAAUUGAUGAAAUGUAUAAUUUAAAUUGAUGCUAACCUUGGGUGAUAUUUUAACUGGUCAUGUUUCUGAAACACAAUAUAAAUAUCUUGCUAGAAACAAACUAUAAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.14%
ME_num:
MEP:
2.85%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 4.2680861789374 | 0.0107041189428065 |