RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937951

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

10791689

End:

10793725

Strand:

-

Ref_name:

LOC112937951

Sequence
(XR_003240906.1):

CGCGAUAAUCAACGCACAUCCUCUUGGUCUUGUCUUUCUUUUCCACAAAGAUAACCGGAGCACCCCAAGGUGAAGUACUCGGUCGGAUGUACCCUUUCUGCAGCUGUUCGUCAACCUGCUUUUUGACUUUUGCUAGCUCAUUAGCUGCCAUUCUGUACGGCCUCUUGUAGAUUGGAGCAGUUCCGGGUGCCAGAUCAAUCUGGAACUCGAUUUCUCUCUUCGGUGGCAUUGUAGUGAGGUCUUCUGGGAACACCUCAGGAUACUCUUGUACUAUAGGUAUAUCCUCCAACUUCUUGGGAUUCCACUAAAAUUAUUUCCAAGGCUCUGAAAAUUCCACUAAAAUUCCUGUUAGCAUAUUUUGACAUGUAGAAUCCAAGAAAAAUUCCACAUGCCGAUUCCAAGAAAAAUUCUCUCUUGCCUUUAAACAAAUAAUUUCUUGCGACAAUUUAUUAAUUAAAUUUUUGCUAGGGAGAAGAACUUCAGGGCGUGACAGUAUUCAAAUCCUAGUUUCGCCACUGCAAUCACGGAUGGAGGGAGCUGCAAGGUACUUUAACAGCAAAAUAUGCCCUUAUUCAAGUGAUAAAAUGACCUGCGCAAAAACUGCGACAUCCUCUGUUGAUUGCAAUCACGGGAAGGUUGCAUUUGCAAAUCCGUUUGGAGGGGCCAAGCAAACUUACUCGUCCAGUACAACCACGAAGUGCCCACAUUGUGUGGAAUCCCGUAAUGCCGAGAUAGCUGCAGCCAUCCGAGCCAAAUCUAUCAAGGCUUCGAAGCUGGCACAUUUCGCUUUAACUGUUACGAUGUCAGUAGCAGCUUAUAUGGUCACUCUAAAAAUCAUUGCCAAACCUCAAAAAGAAAAAAAACAUUGCCAAACCUGCCGAUGCUGCAAAUCCUGAAAUGAAGGUUCUAUUUUCCAUGCAGCCACGAUAUUUCUUUUUUUUUUUUUGGUAAGGAUGACUCCCCAUAAGGGAAUUGGGACUCUGUAAUAAGGUGGUCUCUGGAUAUGCUUUGUUUCAUUACUAAUAACUGAGCGGUGCAUGCGUGUAUACCUAAUAAGUGACUCUGUAAUAAGGUGGUGUUUGGCAGCUAUGAUUUUUUUUAAGAAAAAAAUCAUACUCCUCUGUCCAAAGAGACUGCAUAUUAUAAGCUCUGCAGUAAAAAAGUUUAGUUAUAUUUUGUGUA

Sequence
(XR_003240907.1):

AAGGGCGCGAUAAUCAACGCACAUCCUCUUGGUCUUGUCUUUCUUUUCCACAAAGAUAACCGGAGCACCCCAAGGUGAAGUACUCGGUCGGAUGUACCCUUUCUGCAGCUGUUCGUCAACCUGCUUUUUGACUUUUGCUAGCUCAUUAGCUGCCAUUCUGUACGGCCUCUUGUAGAUUGGAGCAGUUCCGGGUGCCAGAUCAAUCUGGAACUCGAUUUCUCUCUUCGGUGGCAUUGUAGUGAGGUCUUCUGGGAACACCUCAGGAUACUCUUGUACUAUAGGGAGAAGAACUUCAGGGCGUGACAGUAUUCAAAUCCUAGUUUCGCCACUGCAAUCACGGAUGGAGGGAGCUGCAAGGUACUUUAACAGCAAAAUAUGCCCUUAUUCAAGUGAUAAAAUGACCUGCGCAAAAACUGCGACAUCCUCUGUUGAUUGCAAUCACGGGAAGGUUGCAUUUGCAAAUCCGUUUGGAGGGGCCAAGCAAACUUACUCGUCCAGUACAACCACGAAGUGCCCACAUUGUGUGGAAUCCCGUAAUGCCGAGAUAGCUGCAGCCAUCCGAGCCAAAUCUAUCAAGGCUUCGAAGCUGGCACAUUUCGCUUUAACUGUUACGAUGUCAGUAGCAGCUUAUAUGGUCACUCUAAAAAUCAUUGCCAAACCUCAAAAAGAAAAAAAACAUUGCCAAACCUGCCGAUGCUGCAAAUCCUGAAAUGAAGGUUCUAUUUUCCAUGCAGCCACGAUAUUUCUUUUUUUUUUUUUGGUAAGGAUGACUCCCCAUAAGGGAAUUGGGACUCUGUAAUAAGGUGGUCUCUGGAUAUGCUUUGUUUCAUUACUAAUAACUGAGCGGUGCAUGCGUGUAUACCUAAUAAGUGACUCUGUAAUAAGGUGGUGUUUGGCAGCUAUGAUUUUUUUUAAGAAAAAAAUCAUACUCCUCUGUCCAAAGAGACUGCAUAUUAUAAGCUCUGCAGUAAAAAAGUUUAGUUAUAUUUUGUGUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

373

LEP:

75.81%

ME_num:

96

MEP:

19.51%

HE_num:

22

HEP:

4.47%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.85

Avg Expression:

5.06

Tip: OSA-LNC112937951 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.475380789143252.37870204768608e-07
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.790448486360370.000649267318220401
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.808597645222390.000338378547548633
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.868057927716690.000204723435390911
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.646551521234680.00107328507498499
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.30445986883280.0337634842638383