RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937943

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

3998449

End:

4002787

Strand:

+

Ref_name:

LOC112937943

Sequence
(XR_003240812.1):

UCUCUAUAGACUAUCUCCAGGUUAGUAGAUAGCUUUGCUCUCUCUCUUCAUUUAAUCUCUUCCAAGUAGGAAAAUAUGCUGACAUGGAUCUCUUAUAUAGAGCCUAUAGAUAACCAUUGUGGGUACCCUUAUGAGUAUGCAGGGAGUACUCCUGCAUGAGAGGCGAACACAAUAAUGAUUCACUGCAUGUCUCUGCAUCCAUUCCAAGGAGGGUAGAUAACCCAAUACUGUAUCGGGCAUUGUCAUUGGAUUGCAUUGCUUUGCUACUAGCUAGCAUAGCAAGCCCAGCCCCAGCCCUGCAACAUUCAGAUGUUCAGAACGGCAUCUGCAUCUGCAUUACAUGCAUGAUGCAGCUUUCCCCAGUGCAAUGGAGUUGAUGAUGCCUCUCGACCAGCCAGCUAUCAGCAGCAGCUGCAGCUAGCAGCAUCCGGCACUGUUCCUUCCAUCGCUAACCACCUGACUGUUCAUCUAUGGAUGAUCAUAUCCGAUCCCCAUCUUGUUUGGAAUGUACAGUUUGUAUAUCUGAAUCUGAUAGAUUGAUCUGGAGCCAAAACCAACAUACAGUAGCUGUAGCAUUACACAUCAACACCACUGUCCCCCUGCAGUAGCACUGUUGCUUAGCCUAGCUAGCUGCAGCUGCCGGUGCCCCCCAACCUGACUGAUUAAACAUCGAUGAUAUUAUCCCUGUCCCUCCCGGCCAACCCUUCUGCAGUGAAAAGGCCAUGCCAUGGAUUCUAGCUAGAGUACCUCGCUAGCUACCAAGAUCAAGCCAUUCAUGCAUGCUGUCUGCAUUAUGGAGUGGAUUGAAUAAUACUAUUAGUUUUCGAGGAUUUUUGUCGGAAUCGAACUGGUUCAUGUGAAAAUCCUGUAAGAUUCCUGAAGGAGAGGCUUUAGUCUAUCACAUCCUUUUGUUUCUUUGGAGAGGAUCGAUGUUAUCCUGGGAAUUAAACGCUGGACCAGGUUGGUGGAUCAACAUUAAUCAGAAGUUCAGAACAGAGGAGCAUUAUGGAGUGGAUCAUCAUGUAUGCACUCAGCAUAUGCCAAUUCAGAUAAUUUCAGAGACCAUUACGCUUUUGCCGUGCUGGGUGAUCGAUCGAAAUCAUGGUUGUGUGUGUCAUCUGCCAUAUGAUCGUGCCAGAAAACCCUGAUCCUGGGUGGUCCUCUUUGGGGUCGCAGCUCAUCUUGUUCAUGGCCAAAGGUAGAAGAAAGAGGAGAGAUCUAGAGUUAUUAUUACUGCGUCGCCAUUAACUGCGCGUGGUGAUUAAGAAGAAAUCAAUGUGCCUCGUUUGUCCUCCCGUCUUAAUUGUGAAAUUUACGGCCGUAUUUACACACCGGCAAUGUGUAUGUAUUGCUGACUGUCAUGGUCAGUCACACACACACACACACAAAGAACAGUAGACAACGACGAUGGCAUCAAAGUGGCAGCAACUUCUUUUACUGUUUCUGAACCACCAUCCUUUUACAGCUUGAAAAGGAGAAUAAUUCAACGUGAAACCAUCUCUCCCUGUUUCAUUCCAGCUAGCAGUCUGUCUGCCGUUGUAUUUGCAUCGUGGUUUUUAGUGAGAUGUCAAAUACCGCUGGACGAUGCUUGGGAGAGGUCAAAUCCCAGCCUCUGCAUCGCGAGAUGCACAUAACCAGCCAGUAGUUAGAUUCGUUCGGGCUCUAAAAGUUAUUUUUGGCUCCGUUAUACUAAAGCCAACCAAUAGAUAUCAAAUACUUAAUGCAGUUAGAUUUAUCUGGGCUCUAAAAGUUUACUCGGUUCUGUCACGACAACCAGCGUCAUAUCGUUUCGAUCGUUUGUAGUUAGAUUUAUCCGGGCUCUAAAAGUUCACUCGGUUUUGCCACAACAACUAGCGUUAUGUCGUUUGUAGUUAGAUUUGUCCGGACUCUAAAAGUUUACUCGGUUUUGCCACCAUAACUAACGUUAUAUCAUCUUGUAGUUAGAUUUGUCCGGGCUCUAAAAUCUUUCUAGGUUCCGCCACGACAGCCAGUGCCAUGUCGUCGCGCCUGGCUGUCGUUGGCGGAGUAGAGCUCACUCCAUCUCCAGCAUCCUAUCCUACCCUUCUACUGGUUUUGAGCUUUGAGGCAGGGUUGAGUUGCGUGUGCUCGAGGCGGCCGGCCGGCCAUCGUUAUCCUCCAUGUGGUGUCACACCAUGAAACCAAGCAGCAAUCCAAAUUCCCAAUCCGGCACAAACACCUUCAUGCGAAAAACGGGAUAGCUACUACUACUUGCUACUAAUGGCCCGGAUUGGUUGGUUCCAGAUGAGGUUCAGUAAAGAUCAGAAAGCGAAGAUUAACCUGCAAAGAAAUCAUCAUAUAUCCGGUUUUUCACCCAUAUCCAUCUUGCCUUACACAUGGUUGCACCUCCUCCUUACAAGUGUUCCAACCUAGCUCCCUUCCAUACCUCUAGCUUUCACCAUGGCACCUGAACUACAACUACAUGCAUAUAAAUCCAGCCACGCGACUCUCCGCGUGGCGGAUCCAGGAAUUUUCUAGAGCCUAGACAAAUACUACACGCGGAUUCCGGUUUACGGAUAGUGUUAGAUAAUGAAGCCCGGAAAAAUACAGGCCAUAUAUCACAGUGGCGCGACUCGCUGGCGAGCCUAGUUGGCAUGCCUACUCUGCAAGAAGAUAACAACAAAUCGUUGUCUGAAAAAAGAUGAUAAAAAAAAUGGAGAUGAGGAGAUGAAAAAUGAGGUGGCAAUGGCAAAAUGCCGCGGGCGCCGUCGGUGUCCGGGGCUCCGGCUCGCCCGGCCGGCGUACUGUGGAGGUCGCGGUGCCUGUCCGGGCUCCGGGUAGACAGAAAGGCCCCAAUGGAGCCCGCCGUAUCUGCUCUGCUACACCUACCCAUCCAUGUCACCAUCCAUAGAUAGACGAUGGCGACGAAGACGGGAUGCGUGCGGAUCAAAAAUAAAAAAUCGGUGGCAUUAAUUCUUGGAAUUGAUUCACUGGACGGACAGUGAAUAUUGCAUGCAACAACUGAUCAUCCCCUGCAAUGGCUUAAUAUUGCCCUGUGUUCAGUGACUUGGCUGCCGUGCUGCAUGCCAGCUAUGGAGGGAGAGAGAUGAAAUGAAAUGAUCUCAAUGGGAGGAAGAGAAUGAUGCCGAGAAAUUAAAAUCUCUCUUGUGUUCAUGCAUUCAAUUUGCUUCUGCACAUGCUCAUUCACUCAUCCAGUCAGUCGCUCACUCACUCACUGGGCUCAGUGACCUAGCUUUGCUACUACUAGCUCACUCAUCAUUCUCUUUGCUUCCUUCACCAAACUUCAGAUUUCCAGUCCCCUGGAUUGGCUUCCUCUGCAACCAUCACAUAAAUUUCCUCUGCCUCCAUGUCUGUACUGACUGCCUCUCUAACUACUCAGCUUUUGUGUGUGUGAUGGAGAUAGAGAUGGCAUCUGAUUUGGCAUUGGCACUAGUAGUACUUUGUACUAGAUUUGCUUGCAAGUUGCAGCCUCUGAAAAUCUGAAUGUUAGUUGAGGAGGCCUGGCCCUGUGUCCUAACUCCUAAUGCACAUAUGCAUGGCAUCUUCUCUGGUUUUGCAUCAUUCAUUCAUGCAUGCAUGCAUGCAAAUGAGGGGGUAGUAGUCAGUAGAUCAUAGAUGUGUCCAGGCUGAAAUGCAAAAAGUAAAAAGGGAUCCCUGCAGAGAUCUCCAAUUUCUUUCACUCUUUCAGAACAAAAGGGGCUCCCUUGUGGCCUUGUGCUUGCAGGAAAAGCCCAAACCCUGCAUCUUUCAGGCUCUUGCCCCACAUGUAUUAUGUACAUGAUUCGUAAACACACAGCUAGCACAUAGUGUUCCCGGCAUAAAAAAAAGAAAAAAAAAGAAAAAAAGAAAAAAAAAGAAGCUAGCACAUAGUGUAGCCCUGUUUCGAGGAGCUUCUCGGAGCCAUGGCUUCUCUCGAAAUCUUCGACUCCCUCAAACAGAAUCCUAAUUAAUUCUUUAACAAAAUUCCAAGAAUUUAUAGUUGUAAAAUCUAAAAAAAUAAACUAGAAAUCAGGAAAUACAAAAUCCAGUUUAGUUUUACUUUUUCAGAUUCAUUCAUUCAUACAAAAUCCAGCUAGCUACUCAUCUUAGCUGCUUCUCAGAAUUUCGAGCUUCCCUGAACAUAUAACCAUGUACUAUUUCUUGCUUGUUCUUCUCUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

418

LEP:

84.96%

ME_num:

73

MEP:

14.84%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.76

Avg Expression:

1.04

Tip: OSA-LNC112937943 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-2.124358163133173.91635373512446e-10
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-2.396817713197526.47037883261322e-13
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-1.105335048691749.11058417710638e-05
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-3.109351512950086.63598337691369e-10
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-1.612553449557147.59983238000163e-06
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-3.231397664858416.56868370092033e-14
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-2.010233920834527.34904321841034e-10
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-2.5296196342281.51585690361874e-13
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-2.292696465808771.92541135953121e-11
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-2.180705848526531.05826410762503e-11
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.158175446219730.00012699757398216
12Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-3.799348887494571.76370229132738e-16
13Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.528745809872134.36225888230945e-11