Chr:
Chr2
Start:
2951599
End:
2959142
Strand:
+
Ref_name:
LOC112937933
Sequence
(XR_003240780.1):
UGGGCCUCCUCCAGUAGUCGAGGUGGUCGUUUCCAUUUGGGCCCAACACGAGACAAUCUUUUCGUUCUUCUCACAGACUAGCGGCGGCCGGCGGGGGAGGUCACCGCGGCCGCCGCCGGCGACGGCGGCGGCUGCGGGAUUGCUCCUCCCGGACCGCUGCCGCGCGCCCGCGAUGCCCUUGAACUGUUCUACGACAAUGCCAGGGCUGGCCUGGUCAGAGUGGAGGCGCUUCCCUUCCCUGUGAGGUGGCGCACUCAGGGUGUUCGGCGAAAUGCUCGAGUAACUUGUACCGGGCGGCAGCGAGCGUGGCCAUAGGCGCCGGAGGAUGACGCCGCGUGUGUGCGUUCCGCAAUGCCACGCUCUCUUCACGCGCGCGAGUCAACCUCCUUCGAGAUGUUUUGUUCGUCGCACUAUGGCGUUCCAGUAGCGGCUGCCAGUUAUACUAUUGGAAAGUCAACUUCUCGACAUUGGCGGCCGCAUGACUUCUCUUACCAGCUUCACCAUGGAUCUCUUCGGCUCUUCGCUAGCUAUUAUUCCGGACCAAAUUUUGACACAACGAUUGAACUGAAGGAUGCUGCAUCACCUUUAUUCAACAGGAAAAUGCACUGUAUUUGCGAAAGAACAAAAAUAAUUGCUGAAGAUUUGUAAGUUGGAGAGAUAGCACUACAUGGAAUUAAAGCGUCAUUCCAAGAAGUGUAUAUGAUUUACAGCAAUCAUCAUGCAUCGGCGUCGCGGUCAUGGUGUGUACAACAACAAUGAACAACUGAUACCUUCUCUGCAUCCCGCCGCCGCCGCCGUGGAGGCGUGGAGGUGUGAUUAUUUAUUGGAGAAUGGGCGCGGAGCGGUGAACGGUCGCCUUACCGAGCGGUGGCCAUCUGGUCUCGUUUCAACGGUUCGGAUCAAGUCGCGCGUGCGAGCGAUUAUAUAAUACUUCGUCCGUUUUAUAAUUGCCUAUACUGUCCAGACAAGUGACAACUUCCAUGAUAGUUGGCCUCUUCAAAGGAUUACAGUCAACACACUUGCAAGCAGUUUCGAGCACCUUUAGCAUUUGCUCUUCGCACCCUGUGCCUCGAAGUGUUGGAUCCAACACCUCAAUCUGCUUUCCCUCUGAUCUCAUCUUAUGUACCCAUGGGACAAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.93%
ME_num:
MEP:
40.85%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.82
Avg Expression:
5.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.74490963272308 | 0.00090687047787722 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.46630570551659 | 0.000530165541539613 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.39594190919095 | 0.0117029026435671 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.29198472926743 | 0.013227232558752 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.10386806647764 | 0.0451504665296219 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.22506765410211 | 0.025605744656537 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 6.10712912597778 | 0.000156551833960634 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.22516495773105 | 0.0490719760494923 |