OSA-LNC112937932


Function Link


Basic Info

Chr:

Chr2

Start:

2961890

End:

2963494

Strand:

+

Ref_name:

LOC112937932

Sequence
(XR_003240776.1):

GCCGUCCUGCCAUGAUGCAGAGAGGCCUCCAUCCUGAGAGAGCUCCCUGAUGAACUUGAGGAGGGAGCUCCUGUCCUGCUCUGUACAUGAACUGGUGAGAGAGGCGAGGUUGAUGAGCAGCACCAGCGCAAGGGCAAGAACAGGACUAAUCAAUGAAGAGCAUCAGGAGGAAGAGAGAAGCUGCCCUUGCUUCCAUUUUAUUCUGGUAUACUAGUCGUAAUCAUAAAAAAGAAAUACAUGUCAAAGAUUAGGUGAUAUAGCCUAUGGAUAUUCAUUAGGACUUUUACAGAUACUGCCACAAUAUCUUCUUGGCAAAAUAUGGUUAUAUAGCAUCCAGUUUCGCCUGUCUUCUUCGGUAUGACGUCUCACUAGCGAGUACUAUUGAAACAUCAAGUGGCCGACCUCCCUGAUCGUGCAAGUUAUUUCCUUUUGUUUGGACCAUUUUUUAUUUUAAUCGUUGUCACAUUGACAUUGUUACAACAUGGAUUAAUUGACUCCAUCUGACAUCACUUCUCUUACCAGCUGCACCCCUGAAGCCAUGAAAGACCUGUUAGCUUGCCAGUUGCCACUGAUGCGUACAAAUUUGUUCAUCCUUGAGAAGAUCAAGGAGAAACGCCCAGGGAUCUUCCGACUAGUUCCACAAGGUGGUGGGCUAGCCGGCGUUGGUUCGAAAUCUCACCCCUUCUAUUUAUUUGAUAUUAGGUUCUUCCCUAAUAUUCACGUUUUUCUUCUGUGAGAAGAUCAAGAAACACAGCUGGUGAAGAUUUGUAAGAUCAGCUUUGCAGGUGGUACAUGGGAAGCAUCAUUCGGAGAGUUGCAUAUAAUCUAGAGCAAUCAUCGGCGUCGCGGUCGUGGUGCGGCACAUGCUCUGGACACCAACAAACACAGCUGAUUGGUUGGUAAUCUGGUGACUAUCUCGUCUCUAUUAUUAUUGUUGUUGUUGUUGUUGAGACGAUCACGCAAGGGCCAAGGCGUUUACUUUCUGCUGUCAAGCGUGCGCGUUGGUUGGCUUAUUUGCUCCACACGUUCAGCUGUUAUCCAUCCUUCAGGCUUCGCCGUUGUAUGACUGUUGACCCAUGGAGGCAUGGACUAUUAUGACGCUUUGUGGUUGUGGAUGCCAUCUGAAUUUUGGAAGCAUAUCCCCUGUGGAUGCCAUCUGGCUGAUCACUUGCAUAGUUGCAUCGGGAUUUAGGACACCACAGGGGAUACUGGUUGAUCACACAUAAUCAUCUUAUGUAUUCUUCCGUUCUAAAAUAACUUAACCGAUAAUAGAAUAUGACAUAACUUAGUACAAUAAAUCUAUAAACGGAUUACGCACCAACAGGCUAACCCUUAUGGGCCUACACGUCAGAGGUAAGUAGAAGAGCCUCAUCGGUGUAGACAUGGUUGAAUGUAGAGUACUCUUGAAUGUACUUCCUGGACCUGGAGCUACACAAGCCUUAGUUUAAUUGAACCGUUGUGUAAAAAUUGUAUUUUUUUUAAGUCAUGGUCAUAUAUUU

Sequence
(XR_003240777.1):

GCCGUCCUGCCAUGAUGCAGAGAGGCCUCCAUCCUGAGAGAGCUCCCUGAUGAACUUGAGGAGGGAGCUCCUGUCCUGCUCUGUACAUGAACUGGUGAGAGAGGCGAGGUUGAUGAGCAGCACCAGCGCAAGGGCAAGAACAGGACUAAUCAAUGAAGAGCAUCAGGAGGAAGAGAGAAGCUGCCCUUGCUUCCAUUUUAUUCUGAUACUGCCACAAUAUCUUCUUGGCAAAAUAUGGUUAUAUAGCAUCCAGUUUCGCCUGUCUUCUUCGGUAUGACGUCUCACUAGCGAGUACUAUUGAAACAUCAAGUGGCCGACCUCCCUGAUCGUGCAAGUUAUUUCCUUUUGUUUGGACCAUUUUUUAUUUUAAUCGUUGUCACAUUGACAUUGUUACAACAUGGAUUAAUUGACUCCAUCUGACAUCACUUCUCUUACCAGCUGCACCCCUGAAGCCAUGAAAGACCUGUUAGCUUGCCAGUUGCCACUGAUGCGUACAAAUUUGUUCAUCCUUGAGAAGAUCAAGGAGAAACGCCCAGGGAUCUUCCGACUAGUUCCACAAGGUGGUGGGCUAGCCGGCGUUGGUUCGAAAUCUCACCCCUUCUAUUUAUUUGAUAUUAGGUUCUUCCCUAAUAUUCACGUUUUUCUUCUGUGAGAAGAUCAAGAAACACAGCUGGUGAAGAUUUGUAAGAUCAGCUUUGCAGGUGGUACAUGGGAAGCAUCAUUCGGAGAGUUGCAUAUAAUCUAGAGCAAUCAUCGGCGUCGCGGUCGUGGUGCGGCACAUGCUCUGGACACCAACAAACACAGCUGAUUGGUUGGUAAUCUGGUGACUAUCUCGUCUCUAUUAUUAUUGUUGUUGUUGUUGUUGAGACGAUCACGCAAGGGCCAAGGCGUUUACUUUCUGCUGUCAAGCGUGCGCGUUGGUUGGCUUAUUUGCUCCACACGUUCAGCUGUUAUCCAUCCUUCAGGCUUCGCCGUUGUAUGACUGUUGACCCAUGGAGGCAUGGACUAUUAUGACGCUUUGUGGUUGUGGAUGCCAUCUGAAUUUUGGAAGCAUAUCCCCUGUGGAUGCCAUCUGGCUGAUCACUUGCAUAGUUGCAUCGGGAUUUAGGACACCACAGGGGAUACUGGUUGAUCACACAUAAUCAUCUUAUGUAUUCUUCCGUUCUAAAAUAACUUAACCGAUAAUAGAAUAUGACAUAACUUAGUACAAUAAAUCUAUAAACGGAUUACGCACCAACAGGCUAACCCUUAUGGGCCUACACGUCAGAGGUAAGUAGAAGAGCCUCAUCGGUGUAGACAUGGUUGAAUGUAGAGUACUCUUGAAUGUACUUCCUGGACCUGGAGCUACACAAGCCUUAGUUUAAUUGAACCGUUGUGUAAAAAUUGUAUUUUUUUUAAGUCAUGGUCAUAUAUUU

Sequence
(XR_003240778.1):

GCCGUCCUGCCAUGAUGCAGAGAGGCCUCCAUCCUGAGAGAGCUCCCUGAUGAACUUGAGGAGGGAGCUCCUGUCCUGCUCUGUACAUGAACUGGUGAGAGAGGCGAGGUUGAUGAGCAGCACCAGCGCAAGGGCAAGAACAGGACUAAUCAAUGAAGAGCAUCAGGAGGAAGAGAGAAGCUGCCCUUGCUUCCAUUUUAUUCUGGUAUACUAGUCGUAAUCAUAAAAAAGAAAUACAUGUCAAAGAUUAGGUGAUAUAGCCUAUGGAUAUUCAUUAGGACUUUUACAGAUACUGCCACAAUAUCUUCUUGGCAAAAUAUGGUUAUAUAGCAUCCAGUUUCGCCUGUCUUCUUCGGUAUGACGUCUCACUAGCGAGUACUAUUGAAACAUCAAGUGGCCGACCUCCCUGAUCCUGCACCCCUGAAGCCAUGAAAGACCUGUUAGCUUGCCAGUUGCCACUGAUGCGUACAAAUUUGUUCAUCCUUGAGAAGAUCAAGGAGAAACGCCCAGGGAUCUUCCGACUAGUUCCACAAGGUGGUGGGCUAGCCGGCGUUGGUUCGAAAUCUCACCCCUUCUAUUUAUUUGAUAUUAGGUUCUUCCCUAAUAUUCACGUUUUUCUUCUGUGAGAAGAUCAAGAAACACAGCUGGUGAAGAUUUGUAAGAUCAGCUUUGCAGGUGGUACAUGGGAAGCAUCAUUCGGAGAGUUGCAUAUAAUCUAGAGCAAUCAUCGGCGUCGCGGUCGUGGUGCGGCACAUGCUCUGGACACCAACAAACACAGCUGAUUGGUUGGUAAUCUGGUGACUAUCUCGUCUCUAUUAUUAUUGUUGUUGUUGUUGUUGAGACGAUCACGCAAGGGCCAAGGCGUUUACUUUCUGCUGUCAAGCGUGCGCGUUGGUUGGCUUAUUUGCUCCACACGUUCAGCUGUUAUCCAUCCUUCAGGCUUCGCCGUUGUAUGACUGUUGACCCAUGGAGGCAUGGACUAUUAUGACGCUUUGUGGUUGUGGAUGCCAUCUGAAUUUUGGAAGCAUAUCCCCUGUGGAUGCCAUCUGGCUGAUCACUUGCAUAGUUGCAUCGGGAUUUAGGACACCACAGGGGAUACUGGUUGAUCACACAUAAUCAUCUUAUGUAUUCUUCCGUUCUAAAAUAACUUAACCGAUAAUAGAAUAUGACAUAACUUAGUACAAUAAAUCUAUAAACGGAUUACGCACCAACAGGCUAACCCUUAUGGGCCUACACGUCAGAGGUAAGUAGAAGAGCCUCAUCGGUGUAGACAUGGUUGAAUGUAGAGUACUCUUGAAUGUACUUCCUGGACCUGGAGCUACACAAGCCUUAGUUUAAUUGAACCGUUGUGUAAAAAUUGUAUUUUUUUUAAGUCAUGGUCAUAUAUUU

Sequence
(XR_003240779.1):

GCCGUCCUGCCAUGAUGCAGAGAGGCCUCCAUCCUGAGAGAGCUCCCUGAUGAACUUGAGGAGGGAGCUCCUGUCCUGCUCUGUACAUGAACUGGUGAGAGAGGCGAGGUUGAUGAGCAGCACCAGCGCAAGGGCAAGAACAGGACUAAUCAAUGAAGAGCAUCAGGAGGAAGAGAGAAGCUGCCCUUGCUUCCAUUUUAUUCUGGUAUACUAGUCGUAAUCAUAAAAAAGAAAUACAUGUCAAAGAUUAGGUGAUAUAGCCUAUGGAUAUUCAUUAGGACUUUUACAGAUACUGCCACAAUAUCUUCUUGGCAAAAUAUGGUUAUAUAGCAUCCAGUUUCGCCUGUCUUCUUCGGUAUGACGUCUCACUAGCGAGUACUAUUGAAACAUCAAGUGGCCGACCUCCCUGAUCGUGCAACUGCACCCCUGAAGCCAUGAAAGACCUGUUAGCUUGCCAGUUGCCACUGAUGCGUACAAAUUUGUUCAUCCUUGAGAAGAUCAAGGAGAAACGCCCAGGGAUCUUCCGACUAGUUCCACAAGGUGGUGGGCUAGCCGGCGUUGGUUCGAAAUCUCACCCCUUCUAUUUAUUUGAUAUUAGGUUCUUCCCUAAUAUUCACGUUUUUCUUCUGUGAGAAGAUCAAGAAACACAGCUGGUGAAGAUUUGUAAGAUCAGCUUUGCAGGUGGUACAUGGGAAGCAUCAUUCGGAGAGUUGCAUAUAAUCUAGAGCAAUCAUCGGCGUCGCGGUCGUGGUGCGGCACAUGCUCUGGACACCAACAAACACAGCUGAUUGGUUGGUAAUCUGGUGACUAUCUCGUCUCUAUUAUUAUUGUUGUUGUUGUUGUUGAGACGAUCACGCAAGGGCCAAGGCGUUUACUUUCUGCUGUCAAGCGUGCGCGUUGGUUGGCUUAUUUGCUCCACACGUUCAGCUGUUAUCCAUCCUUCAGGCUUCGCCGUUGUAUGACUGUUGACCCAUGGAGGCAUGGACUAUUAUGACGCUUUGUGGUUGUGGAUGCCAUCUGAAUUUUGGAAGCAUAUCCCCUGUGGAUGCCAUCUGGCUGAUCACUUGCAUAGUUGCAUCGGGAUUUAGGACACCACAGGGGAUACUGGUUGAUCACACAUAAUCAUCUUAUGUAUUCUUCCGUUCUAAAAUAACUUAACCGAUAAUAGAAUAUGACAUAACUUAGUACAAUAAAUCUAUAAACGGAUUACGCACCAACAGGCUAACCCUUAUGGGCCUACACGUCAGAGGUAAGUAGAAGAGCCUCAUCGGUGUAGACAUGGUUGAAUGUAGAGUACUCUUGAAUGUACUUCCUGGACCUGGAGCUACACAAGCCUUAGUUUAAUUGAACCGUUGUGUAAAAAUUGUAUUUUUUUUAAGUCAUGGUCAUAUAUUU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

133

LEP:

27.03%

ME_num:

353

MEP:

71.75%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.71

Avg Expression:

4.56

Tip: OSA-LNC112937932 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.145521614152670.00141956824755795
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.38359350981921.36767449728334e-05
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.442678435681353.77276890355555e-06
4Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-1.761625393402040.00315374796855891
5Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.480054214921650.00110024804853899