Chr:
Chr2
Start:
2961890
End:
2963494
Strand:
+
Ref_name:
LOC112937932
Sequence
(XR_003240776.1):
GCCGUCCUGCCAUGAUGCAGAGAGGCCUCCAUCCUGAGAGAGCUCCCUGAUGAACUUGAGGAGGGAGCUCCUGUCCUGCUCUGUACAUGAACUGGUGAGAGAGGCGAGGUUGAUGAGCAGCACCAGCGCAAGGGCAAGAACAGGACUAAUCAAUGAAGAGCAUCAGGAGGAAGAGAGAAGCUGCCCUUGCUUCCAUUUUAUUCUGGUAUACUAGUCGUAAUCAUAAAAAAGAAAUACAUGUCAAAGAUUAGGUGAUAUAGCCUAUGGAUAUUCAUUAGGACUUUUACAGAUACUGCCACAAUAUCUUCUUGGCAAAAUAUGGUUAUAUAGCAUCCAGUUUCGCCUGUCUUCUUCGGUAUGACGUCUCACUAGCGAGUACUAUUGAAACAUCAAGUGGCCGACCUCCCUGAUCGUGCAAGUUAUUUCCUUUUGUUUGGACCAUUUUUUAUUUUAAUCGUUGUCACAUUGACAUUGUUACAACAUGGAUUAAUUGACUCCAUCUGACAUCACUUCUCUUACCAGCUGCACCCCUGAAGCCAUGAAAGACCUGUUAGCUUGCCAGUUGCCACUGAUGCGUACAAAUUUGUUCAUCCUUGAGAAGAUCAAGGAGAAACGCCCAGGGAUCUUCCGACUAGUUCCACAAGGUGGUGGGCUAGCCGGCGUUGGUUCGAAAUCUCACCCCUUCUAUUUAUUUGAUAUUAGGUUCUUCCCUAAUAUUCACGUUUUUCUUCUGUGAGAAGAUCAAGAAACACAGCUGGUGAAGAUUUGUAAGAUCAGCUUUGCAGGUGGUACAUGGGAAGCAUCAUUCGGAGAGUUGCAUAUAAUCUAGAGCAAUCAUCGGCGUCGCGGUCGUGGUGCGGCACAUGCUCUGGACACCAACAAACACAGCUGAUUGGUUGGUAAUCUGGUGACUAUCUCGUCUCUAUUAUUAUUGUUGUUGUUGUUGUUGAGACGAUCACGCAAGGGCCAAGGCGUUUACUUUCUGCUGUCAAGCGUGCGCGUUGGUUGGCUUAUUUGCUCCACACGUUCAGCUGUUAUCCAUCCUUCAGGCUUCGCCGUUGUAUGACUGUUGACCCAUGGAGGCAUGGACUAUUAUGACGCUUUGUGGUUGUGGAUGCCAUCUGAAUUUUGGAAGCAUAUCCCCUGUGGAUGCCAUCUGGCUGAUCACUUGCAUAGUUGCAUCGGGAUUUAGGACACCACAGGGGAUACUGGUUGAUCACACAUAAUCAUCUUAUGUAUUCUUCCGUUCUAAAAUAACUUAACCGAUAAUAGAAUAUGACAUAACUUAGUACAAUAAAUCUAUAAACGGAUUACGCACCAACAGGCUAACCCUUAUGGGCCUACACGUCAGAGGUAAGUAGAAGAGCCUCAUCGGUGUAGACAUGGUUGAAUGUAGAGUACUCUUGAAUGUACUUCCUGGACCUGGAGCUACACAAGCCUUAGUUUAAUUGAACCGUUGUGUAAAAAUUGUAUUUUUUUUAAGUCAUGGUCAUAUAUUU
Sequence
(XR_003240777.1):
GCCGUCCUGCCAUGAUGCAGAGAGGCCUCCAUCCUGAGAGAGCUCCCUGAUGAACUUGAGGAGGGAGCUCCUGUCCUGCUCUGUACAUGAACUGGUGAGAGAGGCGAGGUUGAUGAGCAGCACCAGCGCAAGGGCAAGAACAGGACUAAUCAAUGAAGAGCAUCAGGAGGAAGAGAGAAGCUGCCCUUGCUUCCAUUUUAUUCUGAUACUGCCACAAUAUCUUCUUGGCAAAAUAUGGUUAUAUAGCAUCCAGUUUCGCCUGUCUUCUUCGGUAUGACGUCUCACUAGCGAGUACUAUUGAAACAUCAAGUGGCCGACCUCCCUGAUCGUGCAAGUUAUUUCCUUUUGUUUGGACCAUUUUUUAUUUUAAUCGUUGUCACAUUGACAUUGUUACAACAUGGAUUAAUUGACUCCAUCUGACAUCACUUCUCUUACCAGCUGCACCCCUGAAGCCAUGAAAGACCUGUUAGCUUGCCAGUUGCCACUGAUGCGUACAAAUUUGUUCAUCCUUGAGAAGAUCAAGGAGAAACGCCCAGGGAUCUUCCGACUAGUUCCACAAGGUGGUGGGCUAGCCGGCGUUGGUUCGAAAUCUCACCCCUUCUAUUUAUUUGAUAUUAGGUUCUUCCCUAAUAUUCACGUUUUUCUUCUGUGAGAAGAUCAAGAAACACAGCUGGUGAAGAUUUGUAAGAUCAGCUUUGCAGGUGGUACAUGGGAAGCAUCAUUCGGAGAGUUGCAUAUAAUCUAGAGCAAUCAUCGGCGUCGCGGUCGUGGUGCGGCACAUGCUCUGGACACCAACAAACACAGCUGAUUGGUUGGUAAUCUGGUGACUAUCUCGUCUCUAUUAUUAUUGUUGUUGUUGUUGUUGAGACGAUCACGCAAGGGCCAAGGCGUUUACUUUCUGCUGUCAAGCGUGCGCGUUGGUUGGCUUAUUUGCUCCACACGUUCAGCUGUUAUCCAUCCUUCAGGCUUCGCCGUUGUAUGACUGUUGACCCAUGGAGGCAUGGACUAUUAUGACGCUUUGUGGUUGUGGAUGCCAUCUGAAUUUUGGAAGCAUAUCCCCUGUGGAUGCCAUCUGGCUGAUCACUUGCAUAGUUGCAUCGGGAUUUAGGACACCACAGGGGAUACUGGUUGAUCACACAUAAUCAUCUUAUGUAUUCUUCCGUUCUAAAAUAACUUAACCGAUAAUAGAAUAUGACAUAACUUAGUACAAUAAAUCUAUAAACGGAUUACGCACCAACAGGCUAACCCUUAUGGGCCUACACGUCAGAGGUAAGUAGAAGAGCCUCAUCGGUGUAGACAUGGUUGAAUGUAGAGUACUCUUGAAUGUACUUCCUGGACCUGGAGCUACACAAGCCUUAGUUUAAUUGAACCGUUGUGUAAAAAUUGUAUUUUUUUUAAGUCAUGGUCAUAUAUUU
Sequence
(XR_003240778.1):
GCCGUCCUGCCAUGAUGCAGAGAGGCCUCCAUCCUGAGAGAGCUCCCUGAUGAACUUGAGGAGGGAGCUCCUGUCCUGCUCUGUACAUGAACUGGUGAGAGAGGCGAGGUUGAUGAGCAGCACCAGCGCAAGGGCAAGAACAGGACUAAUCAAUGAAGAGCAUCAGGAGGAAGAGAGAAGCUGCCCUUGCUUCCAUUUUAUUCUGGUAUACUAGUCGUAAUCAUAAAAAAGAAAUACAUGUCAAAGAUUAGGUGAUAUAGCCUAUGGAUAUUCAUUAGGACUUUUACAGAUACUGCCACAAUAUCUUCUUGGCAAAAUAUGGUUAUAUAGCAUCCAGUUUCGCCUGUCUUCUUCGGUAUGACGUCUCACUAGCGAGUACUAUUGAAACAUCAAGUGGCCGACCUCCCUGAUCCUGCACCCCUGAAGCCAUGAAAGACCUGUUAGCUUGCCAGUUGCCACUGAUGCGUACAAAUUUGUUCAUCCUUGAGAAGAUCAAGGAGAAACGCCCAGGGAUCUUCCGACUAGUUCCACAAGGUGGUGGGCUAGCCGGCGUUGGUUCGAAAUCUCACCCCUUCUAUUUAUUUGAUAUUAGGUUCUUCCCUAAUAUUCACGUUUUUCUUCUGUGAGAAGAUCAAGAAACACAGCUGGUGAAGAUUUGUAAGAUCAGCUUUGCAGGUGGUACAUGGGAAGCAUCAUUCGGAGAGUUGCAUAUAAUCUAGAGCAAUCAUCGGCGUCGCGGUCGUGGUGCGGCACAUGCUCUGGACACCAACAAACACAGCUGAUUGGUUGGUAAUCUGGUGACUAUCUCGUCUCUAUUAUUAUUGUUGUUGUUGUUGUUGAGACGAUCACGCAAGGGCCAAGGCGUUUACUUUCUGCUGUCAAGCGUGCGCGUUGGUUGGCUUAUUUGCUCCACACGUUCAGCUGUUAUCCAUCCUUCAGGCUUCGCCGUUGUAUGACUGUUGACCCAUGGAGGCAUGGACUAUUAUGACGCUUUGUGGUUGUGGAUGCCAUCUGAAUUUUGGAAGCAUAUCCCCUGUGGAUGCCAUCUGGCUGAUCACUUGCAUAGUUGCAUCGGGAUUUAGGACACCACAGGGGAUACUGGUUGAUCACACAUAAUCAUCUUAUGUAUUCUUCCGUUCUAAAAUAACUUAACCGAUAAUAGAAUAUGACAUAACUUAGUACAAUAAAUCUAUAAACGGAUUACGCACCAACAGGCUAACCCUUAUGGGCCUACACGUCAGAGGUAAGUAGAAGAGCCUCAUCGGUGUAGACAUGGUUGAAUGUAGAGUACUCUUGAAUGUACUUCCUGGACCUGGAGCUACACAAGCCUUAGUUUAAUUGAACCGUUGUGUAAAAAUUGUAUUUUUUUUAAGUCAUGGUCAUAUAUUU
Sequence
(XR_003240779.1):
GCCGUCCUGCCAUGAUGCAGAGAGGCCUCCAUCCUGAGAGAGCUCCCUGAUGAACUUGAGGAGGGAGCUCCUGUCCUGCUCUGUACAUGAACUGGUGAGAGAGGCGAGGUUGAUGAGCAGCACCAGCGCAAGGGCAAGAACAGGACUAAUCAAUGAAGAGCAUCAGGAGGAAGAGAGAAGCUGCCCUUGCUUCCAUUUUAUUCUGGUAUACUAGUCGUAAUCAUAAAAAAGAAAUACAUGUCAAAGAUUAGGUGAUAUAGCCUAUGGAUAUUCAUUAGGACUUUUACAGAUACUGCCACAAUAUCUUCUUGGCAAAAUAUGGUUAUAUAGCAUCCAGUUUCGCCUGUCUUCUUCGGUAUGACGUCUCACUAGCGAGUACUAUUGAAACAUCAAGUGGCCGACCUCCCUGAUCGUGCAACUGCACCCCUGAAGCCAUGAAAGACCUGUUAGCUUGCCAGUUGCCACUGAUGCGUACAAAUUUGUUCAUCCUUGAGAAGAUCAAGGAGAAACGCCCAGGGAUCUUCCGACUAGUUCCACAAGGUGGUGGGCUAGCCGGCGUUGGUUCGAAAUCUCACCCCUUCUAUUUAUUUGAUAUUAGGUUCUUCCCUAAUAUUCACGUUUUUCUUCUGUGAGAAGAUCAAGAAACACAGCUGGUGAAGAUUUGUAAGAUCAGCUUUGCAGGUGGUACAUGGGAAGCAUCAUUCGGAGAGUUGCAUAUAAUCUAGAGCAAUCAUCGGCGUCGCGGUCGUGGUGCGGCACAUGCUCUGGACACCAACAAACACAGCUGAUUGGUUGGUAAUCUGGUGACUAUCUCGUCUCUAUUAUUAUUGUUGUUGUUGUUGUUGAGACGAUCACGCAAGGGCCAAGGCGUUUACUUUCUGCUGUCAAGCGUGCGCGUUGGUUGGCUUAUUUGCUCCACACGUUCAGCUGUUAUCCAUCCUUCAGGCUUCGCCGUUGUAUGACUGUUGACCCAUGGAGGCAUGGACUAUUAUGACGCUUUGUGGUUGUGGAUGCCAUCUGAAUUUUGGAAGCAUAUCCCCUGUGGAUGCCAUCUGGCUGAUCACUUGCAUAGUUGCAUCGGGAUUUAGGACACCACAGGGGAUACUGGUUGAUCACACAUAAUCAUCUUAUGUAUUCUUCCGUUCUAAAAUAACUUAACCGAUAAUAGAAUAUGACAUAACUUAGUACAAUAAAUCUAUAAACGGAUUACGCACCAACAGGCUAACCCUUAUGGGCCUACACGUCAGAGGUAAGUAGAAGAGCCUCAUCGGUGUAGACAUGGUUGAAUGUAGAGUACUCUUGAAUGUACUUCCUGGACCUGGAGCUACACAAGCCUUAGUUUAAUUGAACCGUUGUGUAAAAAUUGUAUUUUUUUUAAGUCAUGGUCAUAUAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.03%
ME_num:
MEP:
71.75%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.71
Avg Expression:
4.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.14552161415267 | 0.00141956824755795 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.3835935098192 | 1.36767449728334e-05 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.44267843568135 | 3.77276890355555e-06 |
4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.76162539340204 | 0.00315374796855891 |
5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.48005421492165 | 0.00110024804853899 |