Chr:
Chr2
Start:
2765240
End:
2765875
Strand:
+
Ref_name:
LOC112937930
Sequence
(XR_003240771.1):
UGUAACUUGGUUGGUUCGUUGCAUAGCCAUUGUCCCGGCGCGAUUAAUAGAGAGGCUGACGGAUCAGUGUGCCGGAGACGCAAAGCCUGGUAAAUUGUCUCCAGAACGGUUCGAUGAUCCUCCAGUACUCUGCCUGCAGUGAGAGUGUGAGGUGAGUGAUAUGAUUCAGGAACGACAAAGGAAGAAAAGAAAAGGAUGCAAUCAGCAGAGCAAAGCUGGUACAGGAUGGAUGCAGCCAUGAAAGGACAUGUAUGAAGUAAUAUAGUGGUGAAACCCUACUUCAUCUAUUGCAGUUUAUGGCUCUUUUGAAUGCAGAAAUUUCAUCUAUUGGAGUAGUAUUUUCAUAGGAGUCAGUUCAAUUUUCAAAAAAAUUGUAACUAUAUUCUUCUGUACCGAAUAGCUGAAUAGAUGAAAAAUGUGAUAAUUAUUCGAGGAUAUAAGCGAAUGAAUUAACUAUUAUAGAGUUGAAAAUAGAUUUAAAUCAAUACUUUAAGAAACUCAUGUAUAAAAAGUUCUUAUAAAAAUAGCAUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.43%
ME_num:
MEP:
32.52%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.91
Avg Expression:
5.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.38740771476294 | 0.0189032455228418 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.51902650013864 | 0.0133404915132383 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.01089885622362 | 0.00058648141084956 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.61305443598369 | 0.000384731538371228 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.81584657131286 | 0.000420979227065653 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.00786897543211 | 5.21503391101405e-06 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.63440658864342 | 0.0106496009540568 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.68950034317543 | 0.00506924762798034 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -3.88085517651102 | 5.78594620194544e-06 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -3.85337377822869 | 3.84573665980709e-06 |
| 11 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.53193721969485 | 0.0330992276589677 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.53653601064322 | 2.17262202215581e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.2403851393674 | 0.015958832737913 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.8688044123312 | 0.000110966987483504 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.02737910950301 | 1.80455631899796e-08 |