RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937927

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

1973853

End:

1974280

Strand:

+

Ref_name:

LOC112937927

Sequence
(XR_003240764.1):

GACAUGGUACAGGUCUGCAACUCCAAGAACAGCAUUGACAUUGCCAUAUUGGCAAUGCCAUUGUGCAAGUCUAGGACGCUAAUCAAGAGAAGAGGCUAAAUGAUUCUUCCCAAGAACAAUUCUGUACACUAACAUUGACAGGGCGAAAUGGUAGUCACAUUGUGAAAAGGGAGUAAAAAAAAAUAAUCAAGUUUACUGACCUUGGAACCCCUUGCCGAUGGACUUGCCGGAGAUGUCGACGAGGUCGCCCUCCUUGAACAUGUCGGCGAAGUCGAGCGGCUGGCCGGGGUCGUACCCGUCGACGGACUGGAGGCGGAACUCCUGCAGGUGGCGGAGCGGCGGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

233

LEP:

47.36%

ME_num:

253

MEP:

51.42%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.68

Avg Expression:

1.92

Tip: OSA-LNC112937927 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated-2.323153942816920.0394514743540402