Chr:
Chr2
Start:
1549893
End:
1553381
Strand:
-
Ref_name:
LOC112937925
Sequence
(XR_003240760.1):
CCCAUCUCCUCCUCAUCUCCACCUCCACCGCCACCGCCACCGCGAGGAAGACGCGGUCGCCGUAGCAGCCACGUCUCCUCCACCACCUCGUCUCCCUCUCGAGAGAGACACCGCGCGUCUCGUCUCGUCUCAUGGCGCCGCCGCCUCGGGCUCGCUUGGUGCAGAUCGGGACCCGCCGCCGCCGCUGCCGGGGCCGGAUCCCGCCUUGCACCAAGUGAAUCGGAGCCGGCGUAGCGCCCUCCUUCCGCCGAUCCGCCGCCGAUGCUGCGCUGCUUGGUUGUUUUUAUUGUCUCUCCUUCGUUUCUGGGUCGGUAUCGGGACGGGGUUAGCGAUGAAUCGGAUCGAAUUGCUGAUCCUCCUCGUGUUCGUGUUCGUAGGUGUGGGGCGUACGCGUUUGUAUUAGAUUUAAUUUUUUUUUCAGAUCUAGAUCUGGUGCCUAAUUCUCGAUUACUUAUUCUAUCUAUGAUUCGUGUCGGCGUUAUCAAGUUGGAAUUUCCCCUAAUUUUUGGUGGCUAUCCUGAGUUUGGUACUCGUAUCAGUAUCAGGAGUAUGGUUUCAGGGGAGGCCACCUAGAAUUAGCGGGAAAAAGAUCUGAAUCUCAUUGUCUUUUUGGGUAGAUGAGGUUUAUUUGCGAUCUAUGCUUUGAUUGAACUGUGGGUAUCAUUUAUUGAUAUGGAUGUUGUUAAUCUGAAUCUACCACUGCUAGUACGGGUCUAUCAUGGUUGCUAAUUAAGAUGAAGGUUGAAAUUAUGGUGAAUUCAUUUUGGUAUAAUGAUCUGUGACCAUGAGUUCAUGCUGAAUCCUGUAUAUGCUUAAUUUAGCACAUCUGCUGUAGUCUGCAUAGUGGUCUUCAUGGCAUAUGCUAAUUCUGGUAGUGCCACCAAUAAGGUGUGGCCUUGCCCUUGCUCUGUUCAGUUGUGGAAAUUAAGAACUUUGAUUCUAAAUGCAUGCUAUUUGUUAGAGGCUGUGUGUGGCUACAAGUUUCUACAUGCCCUUUUGGCCUAACAGAGGCAUAUGCUUAUCGCUAAUAUAGACCUUAGCCAUGGUCAAACAAACAGGUUACUAGUUGCAAGUUUGCCUUUCUCGUAUUUUAAGAUCUAAUUCCGAGGAUAAAGCUAAUAGACCGGAGAUAAUUAGUGAUGCGAAAAAAGACUUAGUGUUUCAAACAACUUUGGGACUUAUCUAGUUUAUCUACUGACCUAGGUAAGUGAAUUAUUGUGCUAUAUAGCUGAGUAAUUUAAUUAAUAGUGCAAUAAAACUACUUGUCUCUAGUUUAUCGAUGUUAUGAAAAUGACUAAUUCAAUUUAUGUUGUAAUUGUAAAUUGUUUUGAGGUAAACUUUCAAACUUACUUUCUUAAGUUUACAGGUUUAACUCUUUUCUUUAAUGGCCUGUCGAAGUAUUUAAUUCAUGGAUUGAUUCAACGGCGGGAAGAUAGAUUUACUACAUCAAAAAGCAGCUGGCUUUCCUUUUGAAAAAAAAGCAUCGAUCUGUUUUGCCGGGCCAAAAUGCAUUAAUCUUGUUCUGGAGAUAAUUUUAAAUUCCUUCACAGUGUACAACUUUGAACCAAUGGGCUUCUUUGAUGCUCAACGGUUUUGCAUCCAUGCUAGUACUAGUAUAUUUGCAUAUGUAUCUAUUUGUAGGGAUGUGCUUUUCCUCUGGAUUGAUGCUGGCUGCGCUGCCUGAAAUAGUAAACACAGUACAAAUCAUUGAUAAAUUAAACAAGACCUAGUCUUAGUUCAAAUGUCAGGCCAUUGAUUGGUCUAGUUUUGUGGGUAUCUUGAUAGAUCCAGCUUUCACCAUAAACUAACAAUGGUUUCUAUUCAGCUUUAUUUGUUGUCUAACAAUUCGCAUGCUCCUCUUUAUACUGCUUAAAAUGGAAGUUAUGGAAGUAAAAAUUCCUGGUUUCAAGUAUUGCUUCAGGAUUUAUAGUAACAGUGCAGAGUGCUAUUUAUGCAUAAUUCAUCCAUAAUUUUGGUAAGAUGCUGGACUUCUUUUUAUCAAUCAUAUCAUUUUCACAGGCAAGACACUUUUCUCACUGUACAAAUAUUCAAAGUCUCCAAGAAGCAUCGCAUUCACCGUUCCUAUGAUUUGACGCAUAUCACAUUCGGUGACUCAUAACCAAAGUUGGAAUUGGGUUCCUUUUGUUUAUAAAAAGAAAAAAAAAGAAAACCUGUAACCUGUUGUGGGAAUAUAUGCUGCGAGAUCAAGAUUCUUUUUCCAUCAGAGAUAGAUAAGGAAGAGACAAAGUAGCCGAUUGGCACUAGCUGGACAUUUGAACUUGUUCCAUGAAAAGUGGAUUCCCUACAUUUUGAGCUGGAUGCCCUGAUCAGUGAGGUGUAAAUUUUUAGUGGUUAGAAUAUUCUGCUAAAAGCCAGUGACAGCCUUCAGGAGAACAUGUUCUGAAAAGCUGUCGAAGAAUAUAAAUAUCUGACCACCACCCCGGAGAUAGAUUUGAAUGGAUGAGCAGAGCCUGAUAAAAUUCCAGUAUUUAGUGCAUGCAAUAAGGUCAAGUUGGUGUGGUGGUUGUACAAUAUAUACUGUAGUAUUUUGUUUCUAAUCAUGUUCUAACAUGGUGGCAGUAAAAUAUUUUAGCUCCGUACCUGUACCAUGAUCAAACAUGGAGGUGGUAAACUAUUCUAGUUCCAUCACUGUAUGAUGAUACUAACAUGGUUGAGCAGUACUACAUAUAUAGUGUUUUUCUUUUGUCCAAACAUAAAGAAGAAUAUGUUAUUGUCACAUGGUAUUGGGAUCGGCAAGCCGUCGAUUUCGCAUCUACUAUUUCAUGUGCCAACUGUGUGGUUUACAGUUGAAUUAUUCUGGGGGAUAGUACCAGUGUACAAGAUCACACACAGAUCAGCUGGAUUGGAAUACUGGGGAGGAUGCAGGGUACUUUGAUCUUUGAGUGAUUUGUGUGGCAGAUCAAAAACAUGGUGGGCUCCUGUGAUGGAGCUGGUUGAUGGUAGCUGCUGUCGCUUGUGCUGUUCCAGGCAGGCUCCAGCACAUGAAAAGCCUGAGCUGCUGCUGCUGCUGGUGUUGAGAGAGGGGAGCUGCAACUUCUCUGGUGGAAUUGGGAAUCUUCUGCAAGGUUGGGUUGGGUGUGGGGGGUGCGUCUCUCUGGGAAAUUAUCUUGAGAGAUUGCGUGCUGUUCUUCUGUCCCGGCGCAGUGAUGGAUAGUGUGUCCGUUCUGGCAGUGCAGCUGUGCAGGAGGUGCAGCCCAGUCAUCUCUGCUGCAUGUGUUUCUGCUGCCUUUUCGGACCCGUGCAAAGUUACAUGUACUCCAGUAUUUUCAUGUUUCUUGCUAUGAUUGUGUAUGUACUCCGGUUUUCAUGUUUCUUAUGGUUAUGUGAAGUGACAUGCUAAGAAUUUCAAUGGUGUGUACUUAAUCUGAAGAAGUGGCAAGCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
7.32%
HE_num:
HEP:
92.48%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.61
Avg Expression:
50.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.34481020392014 | 9.55567338967028e-51 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.14309822536265 | 7.16859949738031e-39 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.33720732711472 | 6.32505994469834e-41 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.25076547749083 | 0.00573289648732236 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.35671281645633 | 0.012222568147522 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.49821727942903 | 1.50746274511492e-28 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.358593629303 | 1.72029800119127e-44 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.32005900808451 | 8.97942664775164e-27 |
| 9 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 2.00545306110273 | 7.77831968718418e-10 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.20656653063286 | 1.49163473264858e-42 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.5418144047491 | 5.97242136544817e-14 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.45786198186984 | 2.17314058703509e-21 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.01836520795218 | 6.44927250069127e-05 |