RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937880

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

14985357

End:

14986349

Strand:

+

Ref_name:

LOC112937880

Sequence
(XR_003240722.1):

AUCUCUUUUCUCAGCCUUCCCGGCUUACCACCUUUUCCCCACCUUCUUCCCUGCUUCCCCUCCUCUCCACCGUCAACAGCGGGCGUCGGUGGCGGCCCCGUGGGUGCGCCUCCACGCCACCCGCAGCACCCAGGAUGAGGAGGUCAAGGUCGACGCCACCAUGUUCGACGGCGCCGCCGUCCCGCCCCCAGACGCGCCCCUCUUCCGCCGCGUCGAGUCGCUCGACCACGUCCCGCGCCUCCACCUCGGCCUCAUCAUCGAGGCCUCUACCGCGACAUGUUGCACCAGCACCAGAAAUCAUGUUCAAGCUGGAGGCUAGGGAGAGGGAGUACGUGAGGAAAUUCUUGCAGGAGAGGGCGGCGGCGGCAGCGGCGGCCGGGCGAGGCGGCGCUCCCACGGGAGAUUCACGACGAGAUCGGCCUAGAGUUCCUCGGCAACGUCACCGGCAAGCCAUACACGCUCCACGCCAACAUCUUCGCCAACGGCGUCGGCAGCCGCGAGCAGCAGUCGUCGCAUCUCCUCCUGGUCGUGGUCCUCAUCGUGCACAUCGUCGCUCGGCUCCCUUGACGACGAUGCCGUCGUUGCGUGCGUCGUCAAGGCGGCGGCGAGCGGGCGAGCGGGCGGCGGCCAUUUUCACUUUUUUUUUGUUUUUUUUCCGUGCGAGCGGUAUAAUAUGACCGCAUCGGGAUAAUCGAUUAUCCCGUGCGGUCCAUUAUCCCAUACGGUUGGGCCGUCCGUACGCGAAAAUAUUGAUUUUUUCAGACAUUUGGGUAUAGACGGGCAAAUCCUCCGCACAGAAAAAUCAUUUUGACCGCAAGGAAAAAUGGUUUUCGCAGUAACGAGAGACCGAAGAAGAUUGUACAAUUAUUAAUUGGGUAAUUUGUAACCAUGCCAUUAUAAUUUUUUAAAGUUUAAGAUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

212

LEP:

43.09%

ME_num:

237

MEP:

48.17%

HE_num:

42

HEP:

8.54%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seedling

Tau :

0.66

Avg Expression:

3.64

Tip: OSA-LNC112937880 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.770233976912270.000972737100423548
2IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h1.678256435862290.00194183478540517
3IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h1.275839834664370.034609522614578
4IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h1.381135091359690.0068597519942664
5IR64 // panicle // Dawn--/--IR64 // panicle // Dusk1.630308343718190.000638148224475355
6Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-1.636449251295760.0109466401156664