Chr:
Chr2
Start:
34284722
End:
34288565
Strand:
-
Ref_name:
LOC112937868
Sequence
(XR_003240687.1):
UAGUGAAGACUUCUGUUAAUUUCACAGCCUCUCUGCGUGCACUGGUACUACUACUAGCUAGUGGUAAAUUCAAAGCAUUCAAGACAGAGGAAAAAACACACAAUUCAAGCAGCUAAGCCCCUUCUAGAAUGGAACAGACAAAGGUGGUCCAAGGAAGAGCUAUAGCAAUCAAGCUGUGCAUUGCAUUGCAUUGCAUGCAUGAGAAGGUUAUAACCUCUGCACUCACACCAUAUGCAUGUCCUUUUUAACCCAUCCAAUGCCCCUUGUUGCUGCAACCUCAUUUAGAUCUCAUCCUUCUCUUCAUAUAUACAUGCAUACUGCUAUAAGUCUACUGUACGUCUACCACAGCUUGCAGCCAUAAAGCUCUUCGUCCUCUCUCUUUCUACGGCUGUGGAGCUGAAGCAUGGCCUAGCUGAGCUAGCAGCUGGUUCUUGGUUAUAUAAAGAGAGAUAGCUAGGAUCAAGAGAGAGGCAGAUGGCAUGGAGAGGUGUUGCAAUGUGCAUUGGAUGUGUAGAUAGAGCCUGCAGAUCUCGAUCGAUCUCUUCAAGUCCAUGCCAUGCCUUUCCACAGCUUUCUUGAACUUCUCUUGUGCCUCACUCACUUUCAUUACUGGAGAGAUAUGCAUCAUCAGUGGAAGCUUAUAGGGAGAGGAGUGCAAGAAGAGGGUCAAGAAAGCUGUGGGAAGAAAUGGCAUUACAAGGACUUUGAAUUCAGUUAGCAAUGCCAUGAGACAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAUGUGAUGCUAAUUUUCCAUUUCAUUGACACUGGAGCGAUUGGAUCUAUCCUCUUUGUAGGGAGGCAUUUGAAGGCACUUCUCACAUGUUCAAGGAAUGUUCUUUCAUCUCUGAAGUGUGGAACAAAAUCUGUAUUUGGAAGGGGUUAGAUCACAACUCUUUGCCUAACAACUUGGAUUUGAAAAGCUGGUGGUGCUCUCUUUCAGCCAUUCAACCAAAACCCCAUCAAAAAAGAAUUAUGGGUUGUUUGAUCACUUCCUGGUAGAACAUCUGGUUGGAGCGGAAUAAGCGUAUAUUCCAAAAAACUUUGUCAUCGGCUGAUAGGGUGGCUUCCUUGAUUCUGCAAGAUCUUGACCUGAGACAUUCAGCUUUCCAAUCUCAGUGAGGCCGUCCCUCUUUUUGUAAUUUUUGGUUUUUUUCGCUUUGCUUUUGUGCUCUGUUUUUGUAAACAACUUUUUCUUCUUCUAAUAUAUUCCUGCAGCCCUUCUGCGUCGUUUCCCUAAAAAAUAAAUAUAAUGGCAUAUUCAGAAAAAAAAAAGACUAUACUGUAGCAAAAUUAAGGGGGAAGUUUAAUGGGCCCACUCUCUGAAAGGCUGAGGCAGGGGAUUGGGUAGUUCCAUAUCCUGUCAAGCUGGAGAAGUAUAGGCUUUUGCUUUAGAGAGUCCCACAGGCAGUGAGGCAGUGACAGAAGGCAGCUUUCCCUCCUGCUCACUCCACCUCUCUUUCCUCACCUCAGCUCAGCUCAGCCCAGCCCGCUUCAGAGAAGGAAGCUCACUCACCAUGCAUCCAUCGCAACAAAACAAAAGAGCAGGGACGGCACAUGGCGCCAACGGGGGGGGUCACUGAAACGUGGGCCCCACCGCUGGUCCAGGCCCACAUGUAGUGUCAGUGGCUCGUGCCGUGACAGGUAGGCUGCUCUGCUCAUCUCCGGAAUCUAGAUCGAUCUCACUCGCCCUGUCUGUCGUCGUCUCGCUCAUGUCACUCGUAGGGAGAUCCGAGUAGAAGGAGAAGAAAGAAUUUGGAUGAAUUCCACUGCAAGGAAGGCAAAGGCAAAGGGAGCAAAAGCACAAGGAUGAUGAUGUUGGAUGGCUGCUUCAGGAAGGAAUCCCAGUGAAAAUUCUCCCUGGGAACCUGCCUGCCUGCACUGCACUGCAACCCCCAGCAUGGGGACAGAAAGAACAAUAUGCAUGCGUGCGUGGCUGGCUCUCUCAGACAAAAUACCUGAGGGUGUGUUUUUCAUGCUAAAAUUAAAAGUUUAGUUGAAAUUAAAACGAUGUGACGAAAAAGUUGAAAGUUUAUGUGUGUGAAAAAGUUUGGAUGUCAUAAAAAAGUUAGAAGUUUAAAGAAAACUUUGGAUCUAAACUCAGCCUGAUGUGAUUAAGCUAAAGUAGGAAUAAAUGAACAGUAACUCCAACACACCACUUCAUUUCACUUUUGACCGGUCACUGAGACCCUUCUACUGAAGUAUGAACCCCAUGUAAAUUAAAAUGCAGAUAUAUAUGUACAAACACAGGUGCAAUGAAAAAAGGAAGUUGAAUUCCUGCCGGUUUAUAGUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.09%
ME_num:
MEP:
27.85%
HE_num:
HEP:
3.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.84
Avg Expression:
4.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.61416979148316 | 0.0406570311556859 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.451849185763 | 4.4186389603348e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.3672451433634 | 1.14028585117523e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.48702740758767 | 0.00389877141199857 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.26574002213594 | 0.0065197120943366 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.77634263231786 | 5.44816518189428e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.50446042862911 | 2.62770057791345e-05 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -2.01313752385062 | 0.00374583453890662 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 6.80735696940688 | 9.76278572422405e-08 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 7.76750296325484 | 1.64210224233335e-10 |