Chr:
Chr2
Start:
29525339
End:
29528412
Strand:
-
Ref_name:
LOC112937848
Sequence
(XR_003240513.1):
UCCUCCCGGUGGAAGUCAGGUUGGGCUAGGCUGGCUAGCCAAGAGGGCUUUUAUAGGCUCCUGGGACGCAUCGCCCUGCUUCGGCAGUACGGCGUCAACUUCUCCGCGGAUUUGUUCGUCUCUCAUCUCUUCCGCACGCCGCUGCUCCUCUGCCUCUUCAUGCCCCUGCGGUGUUCGUCGAAUUGCCCGGCUGGGCAUCGAUGUGUGACCAGCGGUUCAAAUGAUCAAAUUCCAGUGUCGUUUUCAGGUAUUGCGCUUUCACUCUAGAAUCACGCGUUUAUCUCAGCAAUUUCUUCCGUUGGACUGCAUAAAAUCUGGAUGUGAUGCUCGGCAGUAUCGCGCUGUUCAGGUUGGUGGCAUGUCGCGACAUUGACUUGUGCCUCGCGGCGGGUUGAUUUCCUCUGCUGCUUGGACGCAUUUAACUACAAAUUGACAUGAAUAGUACUAAAUUAGCAUGGCCUUUUUAAUGGUUGCUGGACUCAACUGCUCAUUAGCUACGUCCGUUAUGAAACUUUGAGUUUGGUAUAAUCGAACGUGGCUAUUUGCUGUUUCAAUGGUAGUUGAUGAUAAGAUCCUCUUUUUUUUUUCUAAUAUACGAGACAUUAGGUAAUGCACAGGACAAAAGCUAAUUGGCCAUAUAAGAUUGAUUUGACUACUUGCUUAUUCGUGAUACAAUUGUGACACAAGCUGCAUACGCUUGCAGCUCUUAUGUCUGAGCAGUGUUAUAAUAAUUAGGUGACUAGGAUGACAAAGUAGCCAAGCUUAUCCUUGUUUUUUUUGUAUGAUUCAACCCUUCAACGAUGUUAAUCUUGUUGAAGCAGUAAAUCGGCAGCUCUUAAGAAGUGAGUGCACUGGGCUCUAAAACACUUUUCAACUGAAAGACUGAAAUGCAGAACUUUUUACCAUAUUUCCUCCUGAUACCACUGUGGCAACCAACUACCAUAGACUACUGUUUUUUUUAAUAAAAAAAAUGACACCAGUCACAUGCUUUUUCUUGAUGCCAAGCCAUCAAGAUACCGAAAUCAAAAGAAGCAGGUGAUCUAGUCAUUUUUGAUCGAUGUGCAUCUUCAUUUCAUUGGUUUGUUGACCUUUCUUGAUAAAUUAUUUUCAGAAGAGACCUUUUGCAAAAAAAACAAGUGUUUGUCAUGUAUGCUGUGAUUUUGCUUGAACUGAGCGGGAUUAAUUGGAUGGAAUCACUGAAAGUAUGUUAUUUUUUAAGUUUUAUGGUUAGAUGACAAAAAUACUAUAUCACUGAAACACUUGCUCAGAGAGAAAUCUAAUUAAUUACGCGUGUGGGUACCUCAUUAUUGAAGAAAUCAGUUGAUUAAAUAUGCCAUGCUGACUUUAUUCUCCUGUUCAUAUGAAAUAGUACAGAUUUGGUUGCAUCAUUUAUGGUGACUUCCUAAAGGUAUGACUCCACAGGCUUAGUUAAACUGAGACAAUUCAGUUGUGUUCACAAGGGAAAUUGUUGCCUCUUAUUAUUAUAUAAAUCAACCAGUUGCACAUUACUAGUUGGUUCUUUGCUCAGUUUAAAUGGACUCUGAAUAAAUAAGUACAACUGAUUCAUGUUCUGUGAGGAUUACUGAUCAGUCUUCCUGAUAUUUCAGUAAAAUGUACUGAAAGUGUACAAGCAGGACUAUACCAGGUAUUCGGUAGAACUAAUUUUAACUCGGUGGAGUGUACAUCUCCACCAGACCACCACCUUGGUUCGAGUUGUUUAAUACUUUGAUCCAAUUUGUGUGCUUUUUAUCUGUUUUGUUAAUAAGAAAUGUAGUUUUCCUACAUGUUUUAAUUUUCAUCUUUGUUCCAAUUAUUUACUUAAAAAAUCAAUAAUUCAAAUUAUUGCUGAUGUUGCUUACCAAUCUCCCCAGUAUUAAUUAAAAGGUGUGUCAUGUAAUCACAAAAUGAAAGGGGGCUUGUCUAUUUGUAUUCAGAGGUAAAGAUAAACGACACAGGUGAAGCAAGGUAAUUUCUCAAGUGAUGCCUUGGACAUAAACAUGUCAAGCUGUCAACUCUUCUUAGUUGAGAGGCAGUACCUGACAUUUAACUCAAGAAGAAGAGAAGCAAUUUGUAUUAGAGAACUACAAAACCUGCUGAAUUUCUGGGCUAUGGAUUUGCCGGCCAGAGCAGUGAAAGGCACCUCCAGGUCCGGACUCCAGAUGAGAGCUACCUCGAAAGAUAAUGCCUAUCCAGCAGGCUUCGCAGAAGGGUCCAUGCGAAGGAAUUUCCCUAAUCCAGACACUUUAGG
Sequence
(XR_003240512.1):
CUCCUCCCGGUGGAAGUCAGGUUGGGCUAGGCUGGCUAGCCAAGAGGGCUUUUAUAGGCUCCUGGGACGCAUCGCCCUGCUUCGGCAGUACGGCGUCAACUUCUCCGCGGAUUUGUUCGUCUCUCAUCUCUUCCGCACGCCGCUGCUCCUCUGCCUCUUCAUGCCCCUGCGGUGUUCGUCGAAUUGCCCGGCUGGGCAUCGAUGUGUGACCAGCGGUUCAAAUGAUCAAAUUCCAGUGUCGUUUUCAGGUAUUGCGCUUUCACUCUAGAAUCACGCGUUUAUCUCAGCAAUUUCUUCCGUUGGACUGCAUAAAAUCUGGAUGUGAUGCUCGGCAGUAUCGCGCUGUUCAGGUUGGUGGCAUGUCGCGACAUUGACUUGUGCCUCGCGGCGGGUUGAUUUCCUCUGCUGCUUGGACGCAUUUAACUACAAAUUGACAUGAAUAGUACUAAAUUAGCAUGGCCUUUUUAAUGGUUGCUGGACUCAACUGCUCAUUAGCUACGUCCGUUAUGAAACUUUGAGUUUGGUAUAAUCGAACGUGGCUAUUUGCUGUUUCAAUGGUAGUUGAUGAUAAGAUCCUCUUUUUUUUUUCUAAUAUACGAGACAUUAGGUAAUGCACAGGACAAAAGCUAAUUGGCCAUAUAAGAUUGAUUUGACUACUUGCUUAUUCGUGAUACAAUUGUGACACAAGCUGCAUACGCUUGCAGCUCUUAUGUCUGAGCAGUGUUAUAAUAAUUAGGUGACUAGGAUGACAAAGUAGCCAAGCUUAUCCUUGUUUUUUUUGUAUGAUUCAACCCUUCAACGAUGUUAAUCUUGUUGAAGCAGUAAAUCGGCAGCUCUUAAGAAGUGAGUGCACUGGGCUCUAAAACACUUUUCAACUGAAAGACUGAAAUGCAGAACUUUUUACCAUAUUUCCUCCUGAUACCACUGUGGCAACCAACUACCAUAGACUACUGUUUUUUUUAAUAAAAAAAAUGACACCAGUCACAUGCUUUUUCUUGAUGCCAAGCCAUCAAGAUACCGAAAUCAAAAGAAGCAGGUGAUCUAGUCAUUUUUGAUCGAUGUGCAUCUUCAUUUCAUUGGUUUGUUGACCUUUCUUGAUAAAUUAUUUUCAGAAGAGACCUUUUGCAAAAAAAACAAGUGUUUGUCAUGUAUGCUGUGAUUUUGCUUGAACUGAGCGGGAUUAAUUGGAUGGAAUCACUGAAAGUAUGUUAUUUUUUAAGUUUUAUGGUUAGAUGACAAAAAUACUAUAUCACUGAAACACUUGCUCAGAGAGAAAUCUAAUUAAUUACGCGUGUGGGUACCUCAUUAUUGAAGAAAUCAGUUGAUUAAAUAUGCCAUGCUGACUUUAUUCUCCUGUUCAUAUGAAAUAGUACAGAUUUGGUUGCAUCAUUUAUGGUGACUUCCUAAAGGUAUGACUCCACAGGCUUAGUUAAACUGAGACAAUUCAGUUGUGUUCACAAGGGAAAUUGUUGCCUCUUAUUAUUAUAUAAAUCAACCAGUUGCACAUUACUAGUUGGUUCUUUGCUCAGUUUAAAUGGACUCUGAAUAAAUAAGUACAACUGAUUCAUGUUCUGUGAGGAUUACUGAUCAGUCUUCCUGAUAUUUCAGUAAAAUGUACUGAAAGUGUACAAGCAGGACUAUACCAGGUAUUCGGUAGAACUAAUUUUAACUCGGUGGAGUGUACAUCUCCACCAGACCACCACCUUGGUUCGAGUUGUUUAAUACUUUGAUCCAAUUUGUGUGCUUUUUAUCUGUUUUGUUAAUAAGAAAUGUAGUUUUCCUACAUGUUUUAAUUUUCAUCUUUGUUCCAAUUAUUUACUUAAAAAAUCAAUAAUUCAAAUUAUUGCUGAUGUUGCUUACCAAUCUCCCCAGUAUUAAUUAAAAGGUGUGUCAUGUAAUCACAAAAUGAAAGGGGGCUUGUCUAUUUGUAUUCAGAGGUAAAGAUAAACGACACAGGUGAAGCAAGGUAAUUUCUCAAGUGAUGCCUUGGACAUAAACAUGUCAAGCUGUCAACUCUUCUUAGUUGAGAGGCAGUACCUGACAUUUAACUCAAGAAGAAGAGAAGCAAUUUGUAUUAGAGAACUACAAAACCUGCUGAAUUUCUGGGCUAUGGUACAUUCAUGUUCUCGUACCAAGCUUGCUGACGCAGGAUUUGCCGGCCAGAGCAGUGAAAGGCACCUCCAGGUCCGGACUCCAGAUGAGAGCUACCUCGAAAGAUAAUGCCUAUCCAGCAGGCUUCGCAGAAGGGUCCAUGCGAAGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
36.18%
ME_num:
MEP:
62.2%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.83
Avg Expression:
7.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.67598530256703 | 3.29940833872652e-09 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.5809916053355 | 2.29435191253375e-08 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.00307594155431 | 0.00472346815863954 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.72183831399076 | 1.69236263015268e-11 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.66664918877489 | 3.72625114475685e-08 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.02012115443185 | 0.00265164240715036 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.34306195490536 | 2.59470788784924e-07 |
8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.05475948339262 | 1.1984314852048e-21 |