OSA-LNC112937848


Function Link


Basic Info

Chr:

Chr2

Start:

29525339

End:

29528412

Strand:

-

Ref_name:

LOC112937848

Sequence
(XR_003240513.1):

UCCUCCCGGUGGAAGUCAGGUUGGGCUAGGCUGGCUAGCCAAGAGGGCUUUUAUAGGCUCCUGGGACGCAUCGCCCUGCUUCGGCAGUACGGCGUCAACUUCUCCGCGGAUUUGUUCGUCUCUCAUCUCUUCCGCACGCCGCUGCUCCUCUGCCUCUUCAUGCCCCUGCGGUGUUCGUCGAAUUGCCCGGCUGGGCAUCGAUGUGUGACCAGCGGUUCAAAUGAUCAAAUUCCAGUGUCGUUUUCAGGUAUUGCGCUUUCACUCUAGAAUCACGCGUUUAUCUCAGCAAUUUCUUCCGUUGGACUGCAUAAAAUCUGGAUGUGAUGCUCGGCAGUAUCGCGCUGUUCAGGUUGGUGGCAUGUCGCGACAUUGACUUGUGCCUCGCGGCGGGUUGAUUUCCUCUGCUGCUUGGACGCAUUUAACUACAAAUUGACAUGAAUAGUACUAAAUUAGCAUGGCCUUUUUAAUGGUUGCUGGACUCAACUGCUCAUUAGCUACGUCCGUUAUGAAACUUUGAGUUUGGUAUAAUCGAACGUGGCUAUUUGCUGUUUCAAUGGUAGUUGAUGAUAAGAUCCUCUUUUUUUUUUCUAAUAUACGAGACAUUAGGUAAUGCACAGGACAAAAGCUAAUUGGCCAUAUAAGAUUGAUUUGACUACUUGCUUAUUCGUGAUACAAUUGUGACACAAGCUGCAUACGCUUGCAGCUCUUAUGUCUGAGCAGUGUUAUAAUAAUUAGGUGACUAGGAUGACAAAGUAGCCAAGCUUAUCCUUGUUUUUUUUGUAUGAUUCAACCCUUCAACGAUGUUAAUCUUGUUGAAGCAGUAAAUCGGCAGCUCUUAAGAAGUGAGUGCACUGGGCUCUAAAACACUUUUCAACUGAAAGACUGAAAUGCAGAACUUUUUACCAUAUUUCCUCCUGAUACCACUGUGGCAACCAACUACCAUAGACUACUGUUUUUUUUAAUAAAAAAAAUGACACCAGUCACAUGCUUUUUCUUGAUGCCAAGCCAUCAAGAUACCGAAAUCAAAAGAAGCAGGUGAUCUAGUCAUUUUUGAUCGAUGUGCAUCUUCAUUUCAUUGGUUUGUUGACCUUUCUUGAUAAAUUAUUUUCAGAAGAGACCUUUUGCAAAAAAAACAAGUGUUUGUCAUGUAUGCUGUGAUUUUGCUUGAACUGAGCGGGAUUAAUUGGAUGGAAUCACUGAAAGUAUGUUAUUUUUUAAGUUUUAUGGUUAGAUGACAAAAAUACUAUAUCACUGAAACACUUGCUCAGAGAGAAAUCUAAUUAAUUACGCGUGUGGGUACCUCAUUAUUGAAGAAAUCAGUUGAUUAAAUAUGCCAUGCUGACUUUAUUCUCCUGUUCAUAUGAAAUAGUACAGAUUUGGUUGCAUCAUUUAUGGUGACUUCCUAAAGGUAUGACUCCACAGGCUUAGUUAAACUGAGACAAUUCAGUUGUGUUCACAAGGGAAAUUGUUGCCUCUUAUUAUUAUAUAAAUCAACCAGUUGCACAUUACUAGUUGGUUCUUUGCUCAGUUUAAAUGGACUCUGAAUAAAUAAGUACAACUGAUUCAUGUUCUGUGAGGAUUACUGAUCAGUCUUCCUGAUAUUUCAGUAAAAUGUACUGAAAGUGUACAAGCAGGACUAUACCAGGUAUUCGGUAGAACUAAUUUUAACUCGGUGGAGUGUACAUCUCCACCAGACCACCACCUUGGUUCGAGUUGUUUAAUACUUUGAUCCAAUUUGUGUGCUUUUUAUCUGUUUUGUUAAUAAGAAAUGUAGUUUUCCUACAUGUUUUAAUUUUCAUCUUUGUUCCAAUUAUUUACUUAAAAAAUCAAUAAUUCAAAUUAUUGCUGAUGUUGCUUACCAAUCUCCCCAGUAUUAAUUAAAAGGUGUGUCAUGUAAUCACAAAAUGAAAGGGGGCUUGUCUAUUUGUAUUCAGAGGUAAAGAUAAACGACACAGGUGAAGCAAGGUAAUUUCUCAAGUGAUGCCUUGGACAUAAACAUGUCAAGCUGUCAACUCUUCUUAGUUGAGAGGCAGUACCUGACAUUUAACUCAAGAAGAAGAGAAGCAAUUUGUAUUAGAGAACUACAAAACCUGCUGAAUUUCUGGGCUAUGGAUUUGCCGGCCAGAGCAGUGAAAGGCACCUCCAGGUCCGGACUCCAGAUGAGAGCUACCUCGAAAGAUAAUGCCUAUCCAGCAGGCUUCGCAGAAGGGUCCAUGCGAAGGAAUUUCCCUAAUCCAGACACUUUAGG

Sequence
(XR_003240512.1):

CUCCUCCCGGUGGAAGUCAGGUUGGGCUAGGCUGGCUAGCCAAGAGGGCUUUUAUAGGCUCCUGGGACGCAUCGCCCUGCUUCGGCAGUACGGCGUCAACUUCUCCGCGGAUUUGUUCGUCUCUCAUCUCUUCCGCACGCCGCUGCUCCUCUGCCUCUUCAUGCCCCUGCGGUGUUCGUCGAAUUGCCCGGCUGGGCAUCGAUGUGUGACCAGCGGUUCAAAUGAUCAAAUUCCAGUGUCGUUUUCAGGUAUUGCGCUUUCACUCUAGAAUCACGCGUUUAUCUCAGCAAUUUCUUCCGUUGGACUGCAUAAAAUCUGGAUGUGAUGCUCGGCAGUAUCGCGCUGUUCAGGUUGGUGGCAUGUCGCGACAUUGACUUGUGCCUCGCGGCGGGUUGAUUUCCUCUGCUGCUUGGACGCAUUUAACUACAAAUUGACAUGAAUAGUACUAAAUUAGCAUGGCCUUUUUAAUGGUUGCUGGACUCAACUGCUCAUUAGCUACGUCCGUUAUGAAACUUUGAGUUUGGUAUAAUCGAACGUGGCUAUUUGCUGUUUCAAUGGUAGUUGAUGAUAAGAUCCUCUUUUUUUUUUCUAAUAUACGAGACAUUAGGUAAUGCACAGGACAAAAGCUAAUUGGCCAUAUAAGAUUGAUUUGACUACUUGCUUAUUCGUGAUACAAUUGUGACACAAGCUGCAUACGCUUGCAGCUCUUAUGUCUGAGCAGUGUUAUAAUAAUUAGGUGACUAGGAUGACAAAGUAGCCAAGCUUAUCCUUGUUUUUUUUGUAUGAUUCAACCCUUCAACGAUGUUAAUCUUGUUGAAGCAGUAAAUCGGCAGCUCUUAAGAAGUGAGUGCACUGGGCUCUAAAACACUUUUCAACUGAAAGACUGAAAUGCAGAACUUUUUACCAUAUUUCCUCCUGAUACCACUGUGGCAACCAACUACCAUAGACUACUGUUUUUUUUAAUAAAAAAAAUGACACCAGUCACAUGCUUUUUCUUGAUGCCAAGCCAUCAAGAUACCGAAAUCAAAAGAAGCAGGUGAUCUAGUCAUUUUUGAUCGAUGUGCAUCUUCAUUUCAUUGGUUUGUUGACCUUUCUUGAUAAAUUAUUUUCAGAAGAGACCUUUUGCAAAAAAAACAAGUGUUUGUCAUGUAUGCUGUGAUUUUGCUUGAACUGAGCGGGAUUAAUUGGAUGGAAUCACUGAAAGUAUGUUAUUUUUUAAGUUUUAUGGUUAGAUGACAAAAAUACUAUAUCACUGAAACACUUGCUCAGAGAGAAAUCUAAUUAAUUACGCGUGUGGGUACCUCAUUAUUGAAGAAAUCAGUUGAUUAAAUAUGCCAUGCUGACUUUAUUCUCCUGUUCAUAUGAAAUAGUACAGAUUUGGUUGCAUCAUUUAUGGUGACUUCCUAAAGGUAUGACUCCACAGGCUUAGUUAAACUGAGACAAUUCAGUUGUGUUCACAAGGGAAAUUGUUGCCUCUUAUUAUUAUAUAAAUCAACCAGUUGCACAUUACUAGUUGGUUCUUUGCUCAGUUUAAAUGGACUCUGAAUAAAUAAGUACAACUGAUUCAUGUUCUGUGAGGAUUACUGAUCAGUCUUCCUGAUAUUUCAGUAAAAUGUACUGAAAGUGUACAAGCAGGACUAUACCAGGUAUUCGGUAGAACUAAUUUUAACUCGGUGGAGUGUACAUCUCCACCAGACCACCACCUUGGUUCGAGUUGUUUAAUACUUUGAUCCAAUUUGUGUGCUUUUUAUCUGUUUUGUUAAUAAGAAAUGUAGUUUUCCUACAUGUUUUAAUUUUCAUCUUUGUUCCAAUUAUUUACUUAAAAAAUCAAUAAUUCAAAUUAUUGCUGAUGUUGCUUACCAAUCUCCCCAGUAUUAAUUAAAAGGUGUGUCAUGUAAUCACAAAAUGAAAGGGGGCUUGUCUAUUUGUAUUCAGAGGUAAAGAUAAACGACACAGGUGAAGCAAGGUAAUUUCUCAAGUGAUGCCUUGGACAUAAACAUGUCAAGCUGUCAACUCUUCUUAGUUGAGAGGCAGUACCUGACAUUUAACUCAAGAAGAAGAGAAGCAAUUUGUAUUAGAGAACUACAAAACCUGCUGAAUUUCUGGGCUAUGGUACAUUCAUGUUCUCGUACCAAGCUUGCUGACGCAGGAUUUGCCGGCCAGAGCAGUGAAAGGCACCUCCAGGUCCGGACUCCAGAUGAGAGCUACCUCGAAAGAUAAUGCCUAUCCAGCAGGCUUCGCAGAAGGGUCCAUGCGAAGGAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

178

LEP:

36.18%

ME_num:

306

MEP:

62.2%

HE_num:

7

HEP:

1.42%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.83

Avg Expression:

7.69

Tip: OSA-LNC112937848 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.675985302567033.29940833872652e-09
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.58099160533552.29435191253375e-08
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.003075941554310.00472346815863954
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.721838313990761.69236263015268e-11
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.666649188774893.72625114475685e-08
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.020121154431850.00265164240715036
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.343061954905362.59470788784924e-07
8Nipponbare // panicle // AM--/--Nipponbare // panicle // PM5.054759483392621.1984314852048e-21