Chr:
Chr2
Start:
29118194
End:
29120439
Strand:
+
Ref_name:
LOC112937847
Sequence
(XR_003240509.1):
GCAUCCAUGGAGGAGGGAGCUGGAGCGUUGGUGCUCGUACCUCGACUUGCUUCUGCAGGGACUGCACGUAGUUGAUGAUCUCGUCGAGCAUGCCGGCCUUGCCGGUGACCUUGUUGCAACCGGGCACCAGCUCCUGCAGCUCUCGCCUCGCAACAAAGACGCGAGAUGGAGGCAGGAUCAAUGGCGGUGGCGUACCCGUUCGGCGAGGCUGUGGCUGUCCGUGGCCUGCCCACGGCGGGCUCUGACGUGGAUGUAGUCGGUCUUCUGGCCGGCGGUCACCGUCGACGCCGAGGUCGCCGGGGAAUCCUUGGGUGACGCCACCUCCGCCUUCUUCUUGGCUCCUGGCCGUGCCCUCUCCGGCCUUCCUUUCCCCACCGCCGCCGCCAUCUGAUCGGGAUGACACGGCUGCUGCUGCUGUUGCUGCUUCCCUCUCUGCCUCUUGCAGAUGCUGUUGCUCUCACCCUGACACAGGUACAUACACAAGCCAGUCAAAUACUCGGUCGGGUAGUAGCUGAACUCUUUGCAGCCAAUGCACAAAUCUCUCUCACCUUUGCGUCGUCCGGUCUCCUCUUCCGGAAGCUGCCUCCGCCGCCGCUGCUGCCGCUGCCGUUGCUGGCCUCCGGCGCCAGCGGCGGCUCGCCGCCUAAGCUCCCGUAACACAUGCUUGCCAGGUCCUGCCACUCCUGGAGGUAGCCGAACAUGGCGCGGCACUUGUCGUCGUCGAGCAUGACGUCGUCGAGUAGCCCCUGGCAGAGGCUCUCGACGGUGUCAAGGUGACCCUUCCGGUGUCGUGAAACGUCGCCGCCGCCGCAUUGCGCCAUAUUACUAACCACUUAGCAAGAAGAGAAGACGAUCAAUUCUAGGAACAAAGCUAAGAUUUGGUUGGUUCUUCCUAUCCUUUGAUGCAAAUAGGUAGUAUGUGACCCUUUCAAGGUAAGCAACAGGAUGGUAGCUAAUGUGUAAGCUUAAGGGGAGGGUUCUUGUGCCUGAAGUUUGCGUGUCCCUUUCUCUCCCUCCCUCUUUUGCUCUUCAGGAAUUUUUUCCUAAUCCAUAUAUAUAGAGUGGACGAUAGGUGGAUAGAGAGGAGGAACCUUUCAUUGUGUAAUCGUACUUUUGGUAUGAGAUUGGAUUUGGCCCUUUAGGUAUGUUCAUGUGAGGUAGGGCUGGAUAAAGUAGUGCGGGUCCCUGUGUUUCAGCUGGCAUAUGCAUUGGCUAGAACGUCUCAUCAAUUGGCCCUCCUGUAAUCCACAAAUUAGCAAUUAUGCUCUUGCUUUCAUUUCCUCUACAAAAGAACAUAUAAAUGUGAGAAUCAAUGGGAUUGCUUUAGUUAUGGGCAUAUGAAUCAACACCAUAUCAGGCAAUAAGAUGUUGGCUCUUGAACCACUCCAUAUUAUUUACUCAUUAUAUACUGCAUCAUCCUUUUCAAUUUGCUUUUGAAUCAUAGUCAUAGCCAUUCUCAAGUAUCAACUUAAGUGAUGAUCAUGCUCCAUGCACUUAGCUAACCUUUUUCUAAAGGAAUAACAUGCACAAGGUUUUAUUUGUGCAUAUACUGAAAUAAGAGGUGGCUUCUGAACAUUUGCUGAUGCUGCAAAAGGACGAUUGGGGAGGUGACAGCUGCUCCAUUAACCUGUAUGGACAGCUCUAUCUUCUCUGCACUGACCCUUGUCCCACCACACCAUACUCGCCACGUGUACAUUUGCAUUAAGAAAUAAGAUGCUCAGAUUAGUGAUAACCCGUUGGCCAUAUUACUGAACAGAACCGGACUUUGCAUUCCAGUUCGUUAACACGAGUAUUCCUUAAUGAGCAGUGCACGUGAACAUCGGCUUAAUUUUUGUCCACUGACAAUCUCCUGGUGAUUGUCUGGAAGCAUGCAUUGCACCCCAUCUUGGUGUCUGUUGUCUAGCACAUUAUGGAAGCAGGAUAUUGAGGGGAACUGUUAGUUUAAGUAGAAGAGACUAUUUUCUUUUGAAGGGCAAGUAAUGCUGCUAUAGAUCAUGAUUAGAUGGAAUUGUGCAACAGUUAGUGGUUGUUCAAAGACAGGAGUGGAUUCGAAAAAACCUGGAGUGCUUCUGUUCGUUUUGCGGCUAGGCGGUUUUCAGUUUAGCAUUCAACUAUAUUAGCUCCCUGUCUAAUUAAUGAACGUUUGUGUGGAUCUGCUGAUGAUCUUAUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.6%
ME_num:
MEP:
69.31%
HE_num:
HEP:
17.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.94
Avg Expression:
26.70
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.46004983928505 | 4.58526033742402e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.87288387010255 | 1.82371975680157e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.52529728402233 | 7.8115841260836e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.44567840014897 | 1.04380014555036e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.62303258689225 | 1.61189869343587e-05 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.16565644218609 | 3.45087889976124e-10 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.75415670161884 | 0.00324975860595875 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.22922674116772 | 0.010181989725217 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.86731591368516 | 4.63919945403238e-05 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 6.35380334653955 | 0.0469673342881708 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.61801430368516 | 3.83953279003397e-06 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.08442800846945 | 0.000148098160370498 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.72235343541696 | 0.000345791829298802 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.76638276723976 | 1.49505167720517e-08 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.42044860832961 | 0.00408548467564653 |
| 16 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.76629030794074 | 1.52991438747537e-08 |
| 17 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.76620732479576 | 1.50552676403493e-08 |
| 18 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.79716936780278 | 0.000267100942271666 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.84305379843506 | 1.28165367168239e-05 |
| 20 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.90875490871889 | 6.50192664942796e-05 |
| 21 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.3636352531795 | 0.00912113369860456 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.61991492316619 | 2.68319211440067e-06 |