Chr:
Chr2
Start:
20568369
End:
20571755
Strand:
+
Ref_name:
LOC112937826
Sequence
(XR_003240442.1):
CGCUCCUCUGGCCUCUCCUAGUUCCGUAGAAGCUAGAGCCCCCUCUAAUUUUGGCGGUUAGCGCCCGAAGCCGUGACGGUUCGGCCGCCGUUCCGCCACCAACGAGCUCGCCGUGGACAAGCCAUCCCGGAGCUCCUCUUAGCCAUAUAGUGAGAAAAACGGAACCCCCGUACGCCGUAGAUGCUCAUGCCCCCAUCAAUCUGGUCGGAAACCUUCCCUACCACCCUAGCCCCGAGCUGCCCGAGCUCGGGAUCAUGGCGUUUCUUGGUUUGCCGCCGUCCAUGCGCUGCCGUGCGCCGUAGCCGCCUGCGGGGUGUUCGCCGGAGCUCUCCGCACCUUCCCCGGCCGCUGGCCUCGCGCCAACCCGGCCUCACCCGGCUGCAUCCUCCCCUGCUGCUUCCGCUCGGGCUGGACUGCUGGAGGUUGAAGACGACUCCCUUCUGAGUCGCUGACGAGCUAGGCCCACCUCCAUCUUCUCGAUAGAAAAAUAAUUUGGAACAAAAGAAAAUCAAGACCUUGACCCCAUUUGUCAGUCCGGUAGCUGUGGAUGGGAUUUCGGAUUAAAAUAAAUCAAUUAGGAACAGUAACUUUUCGCUAUUUCUCGGAUUAAUUCAAAUUUGAGUCUUUAAACUAGCAUAACUUAUUCAUUUUAACUCCAAUUUGAGUGAAACUUAAACCUAAAUUCAUAAGCUUCCCAAUGGUAUAUAACUCACUAUUUAAUAAAAUAUAUUUAUAAUUAUUAAAUAAUUAAUAUCAAAUGAUUAGAUAAUGAUUAAACUAAAAAUGUGCUAGCAAAUAAAAAUUAUCAUUGUACAGUGAACUAGGUAGAGGAAUAUUUGUUGUUAGCAUGUUCUGUCACUAUGGGAGAACCAUGUGUAGCUAUAUGUAUUAGUUCAAUUUAAAGCAAAGAUAGGACAUAUUAGUAUCAUUUAUUAUUCCAUGAUUAUAUAUAGUCAAGUUCAUGAUUUAGUCAUUGUCUAAAUAGAGGAUUAACUUAAUGAGUUUAUAACUAAAAAUCUAAGUACACACAUAUCACAGUCCUUAGUUUGUCCAUGAGGUAUAAUAAGAGAGCUGGGUGUGAUGGAAUCAAUCGAAUGAUAGAUUUAACCAGUGCAAUAUCCUAUAUAGUAGUAUAUAUAUAAUUUGGUUGACGCCUAUUAUUUAACAGAACAAUAAAUAACUCAUGUUCGGUAAAUGAUCCAAUAUUAACAUAUUAUUGAACUCGCAUGUAUAGUACAUCUAUUUAACACAUACACAGUAAGUCAAUCACCUACUUUUGCACCUAUUAAACUAUGAAUUGUUCGAUAAACAUCAAAGUUAGAUAAAACACUAAUUAUAAAUCUUGACCUCGUUACAAGACCACACAGACAAAUAAUCUGUACCUAUAACCUCACAGAUCUAACAUAUAGAGCAUGGAUGAUUAUUAACCCUUUUAUAAUUUAUAAUGACAAGUAAAAUAUGAUCAUAAUUAAAAUAAUGCCCCAUUGGUAAAAUAAUAAUAUAAAUGAUUCCUUGUGAUUGCUUGUUGAUCCUAAUUAAAUUAAUCCAUCCAACGACAGAACCUUUAAUAUAUGACCAUUUUACUUGAAUAGAUGCAUGCGUAGUCAUAUAACCCUCCCAUAACCCUAUAGCUAGACUAAACCACAUAGUAGCACUGUAUAUCUCAUAUAUUAUGCUAGUAGUACCAAUAGAGCCAUCAGGACAAUAUAAAAUACUAAGAAACCUUAGCCCAUAAGCUUUCUUGUCUCAUCAGCUGCUUGCAUGCUAAGUAAUUUAGAGCCUAAGCUACCUCAAUUUUCCUUACCUAUAUAAACUGUGCAGCCAUAGUAGAGACUUCGUAGCACCUUACAAUCCAUUAGCAAACACAGUAAAAUGAGCAACCCUAGUAUUGGUGUAUCGAUUAGUCGUGAAGCAACAUAUGCAAGCUUCCAGGAGGUGAAGGUUGAUCAAGAUUAUAUCAAGAAUAGGAACUAUCCUGAGCAGCAAGUCAUCACUAAUCUUUGAGCAUGUUGAACCCAUUGCGAACUUAUUUUGGAUUUAAAAUAAAGUUUGCAUGCUAUAUGGAUAUACGUGAAUGUCCUACUUUGUUAUAUGCCAUGCCUUUGAUAUUGAUGACCCAUGCAAUCCUUGUAAUCCAUAAUAUCGUGUGUCUUUACUCAAUACUUUAUAAAUGCUUAGCCAUGCUACUUUAGAAUCAUGCAUAUUCAUAUUUAUCAAAAUACUUUAUGCUUGGGCAACUACCUUUGGGAAGGUGGUUGAGAUGCGGCAUGUGGAGACAUGAGUGCCACAUUGCCAUGACAUUGGUGACAUGAUUUGUGAAAGGAAAAAUAAAACUAAACAACUGUUUUCGACUGGGGCGACUGGAUGACUUGGGUGGAGUCCGGUAAAGGCUAGUGCCGUCCCUGGUCAAUUAAGGACCGAGCCAUGAAGUUAAGCAUGAAACGACCUCAGUACAACCGUACUUCUCGUGUGGGUAUAGACCUAGCAGAGUAAAUAGCCGAGCGGAGGCGGAACCCAAGCCGUAGUGGUUUUCUUGUUGUGUGUGAGGCAGGGACUACGGUGGGGCAGCCAUUGGUAUGACCACGAGGGGCGGGUGCCUACAGUGGUGUCGCCAUCGGUAGGACUGCCAUGUGUAAACAUAAACUUAACUAUAACUUAACUCCUCUCACUGCUAGAAAUCUUGGACGCCUAGAGUGCAUGAGGACUAAAGUUGAUGGAGCGGGUACUGCCAAAGUGAGGUUAUGGAAAGGCUUUGCCGUGGCAAGUCUCAUUCGUUGGGAUGUAGGCUCAUGUGUUGGGCAAGUCGCGGAGUACGGGUAAAGUGUACAUCCACUACAGUGUGAGUAAAUCAAUCUAUUCGAAUAGCCGUGCUCGUGGUUAUCGAGCACCGGGACGUGUAUUACACUUGGCUAGACUCUAAUUUCUUAAUCUGAUUGGGAUGGGAUAUGCAUGAUGAUUUUGUGCUGAUGGAUCAACUUCUCGAGAGGCGAGAAGGGGUAGACCCCAGAAAACCAUGACGACCAGUGGCGGGAAGCUAUCCUUGGGAACACAAUGGAUGGUGGACAGAACUGUCGCUGUUUAAUGAACCAUGGAGUUAAAACUUGAUUAGUUUAUGCUAGGUCUUAGGUUUGUGAAAUGAUAUUUGAAAACUCAGCUUUACGCAAAGUAACCAUAGCCACUCCUUGUAUUAUCCUGUACAUUACUGCAUUUUGUGUGGUGGCUUGCUGAGUACUUUUGUACUCAUUGUUGCUCUAUAUAUACCUUUUAGCAGAGUGUUGAAGAGAAGCCCUUGUUAGUACGCUUGCGUACCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.28%
ME_num:
MEP:
31.91%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.94
Avg Expression:
5.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.14423333056384 | 4.06386712217939e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.81573502482319 | 2.6098982927328e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.68355052886278 | 0.00113528492924799 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.29459087032626 | 4.17717929998354e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.54727722788345 | 0.0124807545670084 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.95504881463034 | 1.04882487486141e-09 |
| 7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 6.26397838330961 | 0.00019101112411106 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.74572606322237 | 0.00194992711986336 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.2537023161337 | 0.0382823268637432 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.24966404577561 | 5.6580409120726e-07 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.50527042142121 | 0.0474219421113556 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.58984570977032 | 7.27446454639894e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.08091533952776 | 0.00012017923717708 |