Chr:
Chr2
Start:
23008635
End:
23011178
Strand:
-
Ref_name:
LOC112937820
Sequence
(XR_003240417.1):
UGCUCGUUGCCAUCCCUCCCUUGUUUCCCCUCCUCCUCCAGACCUUCUCUCCUUCAAAGUGAACGAGCCGAAGUCCGCUAUUCCUCUGUAGACAUCAAGUGCUAAUCUCGUUUUCAUCCCCAAAUUUCUUCUGCCAGAGCCAAGGCCGGCUGUGCAGCCGUUUCGCCGUCGUCGACCUUUUUCCGCCGCACCAUAGCACCAGCAGGACCACCUCUCACUGAUCGCGUUGAAGAUCCCACCGGACUCGCAGGAACUGAAGUGGACCUAGAAGGCUACGUUGAAGCUCCCGAAGGCCACAUUUCACGAGGCAAGCCAUAGUUCCAAUCUUUGAUCAUAUUGAAACCUUGUAGAGAACCACUUAGUUAUUUUCUGCAUUGAGUAUUUAUAAAAUUAUUUUGCAUAUGAAUUAUUUUUGAAUAAACUUGUUAGUUUAGUUAUUACCCAUUAUUACAUUGUUAUUAUUGGCCAAAUCCAUGAAUUGCUAUAUCACGUCCUUUGAUAACCUAGGUGUAGAUUUAUAUACUUCACAAUAAUAUUCUAGUGGAUAAGACUACCAAAUAUCUAUACUCAUAUACAUGGUUUACCCGUCGUCACGUGGUGGCGUGUCGGGUGAUAUAAAAUGUGUUAUUUGAUAUGAGUCACUCGCCUGGAGUGAUAUGGAAGAUUAAUUCCGGGUGAAGAUGGAUGUUGUGGUGUGUGAGGCCGUGCAUAUUGUUAUAAUUAUUUUGUGGAAAGUGUAUAUUUACACUUGAAGUAUGCACGGGCCUGUGCUAGUUUUGGUGGCUUUCCCGGAUAUAAGGACUACCCCCUUAUGCCAUGGAAAAUGAUGUAAUUUGCGCCUAUCCAUAGGACUGAGUAAUCAGACUUAGCCUAGUACAUUGUCCCACUAUAUGAAAGACUGUAGGGUGGCUCUAUGAGCAGGUUUGGGGUGGACAUGUGGAAGGGGCUUUGGCCAGGUUGACAUGAUCCACAACGGUGGAACCCGUGAAAGCAGCGACCGUCUAGCCUUGCUUAGGCCUAGCAAGUGCCCGACUGCUAGGACGGAUCAAUAUCCCACUGGGCAGUAACUAGUAGUAAGUGGGAUUCUCAAACGGCUAUGUUGUCCUCAGCCUAGCUAGCUGUUGACAUCAGGUGGGUAAAGCUGGGCAGUCUCUACAGAGAUGAGUCUUAAAUCAUUCGAAUGUGCCGUGCUUCCGGUUAAGAAGCUAUGUCAUUGGGUGAUUCCUAUUUAUCAUGGUAUGAGUAGAUUUUAAAUUAAAAUAUGGAAUAUGACGAAGAUGAGGAUGAAUGGUGAUUAAUAUUGCUACCAUUUUAAAAUGAUGAUUUAUAAUUGUUUGCGAAUAAAAUGUUUGAUAAAGUAGGGAAAAACUAUUUAUAAUAGGCUUGUUAUGGAACCUCCUUGAUGAACUAUAUUCUUUGUACGCCUUGCAUAUAUUCUAUUUGUAUUAUUAUGGAUGUGGCUUGUUGGGUACCUCGUUACUCACCUCUUGCAUAAAAUGUGGUUCAGACGAUCAGUUCUUCCCUGAGGAGGCGCAGGAAGGGGAAGAAUUCUAUGGUGCUGUCGAGUUUUUGUUCUAGGUUGAUCUGCUCUCAGGCGUUGCCUGUGGUGUUUUUAUCCUAUUUUGUGUUUGAGUCUUUUGUUUGUAGGGAGUGUGUUUGGCCUGUCGGCCCCUAAAACCUGUCUUAGUUAUCUUUUAUGUAAUAAUUUCUGUAAAAACUUGGGUAUAUGUAUCGAAAGCUGUUCUGUAUAUCAAUCUGUGUGCGAUCGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.73%
ME_num:
MEP:
23.78%
HE_num:
HEP:
30.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.91
Avg Expression:
66.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 9.62671409360579 | 5.12829470055686e-48 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 8.69371700721868 | 3.51292445114198e-39 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 7.67785919293074 | 2.31869769381571e-29 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 11.8637531902262 | 3.13453591000026e-69 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.74706568870236 | 7.13039330909439e-22 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.29703833835749 | 3.05416992259714e-26 |
| 7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -6.98472800574739 | 2.65249707144315e-13 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.04243361495757 | 1.47631517662533e-07 |
| 9 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.55759740408831 | 0.00809106605767044 |
| 10 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.72265279970955 | 0.0371520206898295 |
| 11 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.28584478117567 | 0.0148184965498234 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.55329802306283 | 1.00604597228418e-13 |
| 13 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -3.53099419738173 | 0.000728196620035604 |
| 14 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -4.67059318621088 | 3.39544429360341e-29 |
| 15 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -5.4894755195649 | 5.09223084075015e-115 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 8.71932032247483 | 8.1793095709397e-39 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 9.08407673810401 | 8.8435805402455e-43 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.11763491899761 | 0.00180774634903947 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -6.50868808249912 | 2.59623979928486e-22 |
| 20 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.18815698295718 | 2.82386997809792e-10 |
| 21 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.97083010628796 | 7.63546523938729e-08 |
| 22 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.84883014555061 | 0.0192330936906653 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.1368148894605 | 3.12157525339011e-10 |
| 24 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -8.38344880097937 | 4.39290074467852e-20 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.84159749059889 | 1.20416714719356e-06 |