Chr:
Chr1
Start:
2050644
End:
2053348
Strand:
-
Ref_name:
LOC112937819
Sequence
(XR_003240416.1):
AUUAAUCUGCAUGCGAGUUAAAGUUAAACCGCGAUUGGUGCAUAUUAUAGUACGUGCUGAUUACGUCAGCACGCAGUGUUUGGUGAGUGUGCACCUUCGUUGAUACCAGCGUACGGAACUUCAAAAUAUUUCAAAUGCAAGUUGGAUAAAGAAAAGCGCAGAGGAAUGCAGGUACUUGUCUCACUGGGCCGUUAGCUGAAGAGGGCCAGAAUAGGCUUUACAGCCCAAACUAUGGGCCUAAAUUCUGACCCAUCACAUAGUACGGGCCAGAAUUUUGUGAUGCGUCCGUGCAGCCCUUGUUCGGUUGUUCCCUUCUCCCCGGCGCCGCCGCGGCGUCGCCGUCGGCGGCGGUGCAACCGUGCAGGAUUGCGGCCGCUGCCGUCUCGCUUCGUGAGCCGCAGCAGUAAACGCCAGCUGCUCGGCCGUAGGCAUUGAGGGAGUCGCCGAACAACGCUAGUGUUCUCCUCCGCUGCGUUGGUGGCGGUGGUGACUGGUUAGGGCGGCGGAUUGGGGAUGGAUUACAAACACAAGCAACGGGGAGCCGGGGAGAUGGGCAUCCUGUCCUGUACUUUCUGCGUUGGGCGAGGCAUAGAUCGAGCAGAUGAACUCAUCAAAAGUUCGAAGGCUGAGUAGAGGUGCCCGCUGCUUCUUCGUUUCUUCAGAGGAACCGUGGAGGAAUCCAUUUUCUUGCUGCCUGAAACAACAGAUUUUAUCAGCAAAAGUAAUGUCAAGAGUAGAAUAUUUGAUGUUGUCUCAAAACAAAUGAAGCAUCACGUUUGAAGUUCAAUAUUCUUUAGAUGAUGCCUGAUUUGUUGAUUGUGUUGGCUGGAGAAUAAUCACAGUUACGGUUAGCUAGAAUACCAAGUAUUUUUUUUCCUUCAAAUCUAUAUGAUAAAGAUAGUUAAUUAGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.21%
ME_num:
MEP:
57.93%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.70
Avg Expression:
3.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.11984124430463 | 0.0230635233963742 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.55753450219742 | 1.24049647511945e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.85237182151611 | 0.000188677743328396 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.28071744891844 | 0.000211608188266794 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.54276566139715 | 4.15221761874351e-05 |
| 6 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.78888112901679 | 0.0445268185551682 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.25864577595551 | 5.15596690449267e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.77478492979046 | 0.000131356387926058 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.54549737770672 | 0.00222843179045319 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.16536599049551 | 3.68712877736429e-06 |