Chr:
Chr1
Start:
1957384
End:
1961546
Strand:
+
Ref_name:
LOC112937813
Sequence
(XR_003240396.1):
CUAUGAUUUGCCGGCCUAGUGAAAAGGCCAUAAUGUUAACAGCACCUGGCCCACUUAAUCGAAGGCGUUGUAAUGGGCCUAGAAGUAAGUCCAUCCAGCCCACGGAUUACAGCAAGCGCUUCAAAGCGCCGCCGCGUCGUCUCCACGCCUCGGGCCUAGGGCACGCGCCGACUCGCCGCCGGGGAGACCGGGCGGCCGGCGAAUCCCCCACCCCAAAACGGAGGCGAAAUUUAGCACGGGCUGUGCGCGGUCGAGCGUCCCCGGACUCAUCGGCGUGGAGAGACGAGGACGCCGCGCGCGGCGCGGCAGGUUAGAUUUGGAUCCGCGCCUGCCGGGGGAUCAGACGAGAAUCGGUUGCAUCUGCCACUGCAUUCUUGCAGCCAGGGUGCAUCCCGUCGGGGCAAUUGCAGGCGAACUCCAGGUCGUCGCUGUACGUGCAAUUCCCGCCGCUUACUUGACAUUUGGGACAAUCCCCUGAAACCACCGCCCACUCUAGUAGAAACCCACUCCUCAUGCUGGCAAUAUAGCCGGCCAUACUCCCAUUGUGACGCUGAACGAUCGGCACAACCGUGAAGUUACAGCCCGGUGGAAUCCCAUCCUCGUGUAAAUGGUGGUCGCUGACGAGCCGGACGGAGGAGUUUUGGUCAUCACAAGGCAGGCUAUGGAAGCCGGGAGGAGCAGCCGCCGCCGGAAGUGACUUGUUACACGAGAGGAAGCGCAGCUCUGCGUUGGCUUCGCUGAUGACGAACGGCGCCUGCCAGAUGCCAUCGGAGAUGUUGAACGGCGGCGCCGGGCAGCCGGUGGCGAGCGGGAGAUUCUCGUCCACCACAUGGACGGUGUGGUUUCCGGUGAAGAUAUCAACAACGCGAUACGCCUCGUAGAUGGUGUGCGUGAGGUAUGCGCCGGUGGCGUUGCACUUGAGCUGGAAGGGCGGCGACCCGCACGGCGGCCGGCCGGGCUCCUCCAGCCAGAACGGGUAGGAGAUGGUCAGCUUGCCGCAUGGCGUGGGCAAGCAGCCAGGACUAGACGAGCUCGCCGGUGCCGGCAACUCGAGGAAGGAAGCUACCAGCAGUAGCAGUAUGAGCGGAGGCAUAUCUGGUGGACUUGGGUACGCAAAUCAACUACGGAAUGCAGUGGUGAAAUGGAUUAUAUGAGAGAGAAGAAGGGGACGAGAGAUCGAGGGAUGGGAUAUGAGGCGUGGGGCAAAAGGACGGUGGCGAAGCGGUUUUGACCGGUCAAAGUCUACGGAUUGAACAUACUGCUACAUUGCUACUACUCUCUCUGCUGCUACAGCUUCUUGACGAAGUACUCCGUACUAUUUUCUCCGUUUCAUCACUAUAGUAUUUUUCACGUUUAUAUUGAUGUUAAUAAAUCUAGAUAGGUAUAUAUGUCUAGAUUAAUUAACAUCAAUAUUAACGUAAGAAACGCUAAAAUGAUUUACAUCGUGAAACGAAGGGAGUAUAGUUUUUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.2%
ME_num:
MEP:
57.72%
HE_num:
HEP:
29.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.93
Avg Expression:
60.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.5023901388357 | 0.0440761520181242 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.41258300088407 | 0.0188959289380468 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.82566562566309 | 0.0155953049068202 |