RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937805

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

20875796

End:

20878194

Strand:

-

Ref_name:

LOC112937805

Sequence
(XR_003240385.1):

AUUUUUUUUGCUAUGCAUAUCCAUUGACAAAUUUCUCAAAAAAUACUCUCUACUACUUAAUCCGUAGGUGAGGAAUGCGCGAUCCCAUCGCGCUCCUCCUCCGGAUCGCGACCCGCAGUUAGCGAGAAAAUAACGGCGCCCCCCAAUCCCCGGUUGUUGCGUCCCCUUCCUCCGCAUCCAACCUCGCGCCGCCCCCACAUCGCCGCGCCCCAUCCUCCUCGCCGCACCAUGCCUCCACUGCCGGCGCCCCCUUCCUCCGCAUUCAACCUCGCGCGCUCCCCAUCUCGUGCGCACUCCCAGAGAUUAAAGGAGUGUAGGAGGAUCUGAUAAAAAGUGGAGCUAUUUUCAUUGCGACGAAGUUGGUAAAAGGAAGCCUGGCAAGAUCAAAUCAAAUGGGAAAGGACGAAGGGCGAAGGCUGUCGCAAUUUCCCCCAAGCUCGCAAACUUGAGCUGGUCAGAAACCAGUACUGAGAAUUCAGCUUUUCAUUUAUCACUAUUUACAUAUGCUAGUAAGGUGCCCAUGCGUUGAAAUGGGAAAUGCUAUAUAUCAAUUUCAAAUUAUGUUAAGUGAAUAGAUAUCAAAUAUUCAUUGAGUGAAAAUUUGUUGAACACAUAUGCAGAUUAAUUUCAAAACAGAAAUAUGUUUUCAUUACAUAAGCAUAAUGAAAGCUUUCUGCGGCAUGAAACAAUCUCAUGGUGUUUAUUAAAUUAUAAAAAGACAACAUAGAUAGAAGACUGCUAUGAAAAUUUAAGAGAGAAUCCCUUAUAUGCCACUGAAAAUUUGUCUGAUCCCUUGGAUGCCACUGAAAAUAAGCUCUUCACUUAUAUGCCAUUGGUUCAAAUUUUCGCUCCCUCUCAUGCCACUGCCAUCCGUUGACUGGUAGUUGACUGUUAACUGUAGAGUGAAAUGACGUAUUUGCCCUUCUUGAGUUGAUAGGCAUGCAGUAGGUGUUAGUAUGUCAGUUAUAUACUACAUUUUAGCUAGGCAUCACAUAUAUUUGGAAUAAAUGAAUAUAUGAAUGUAUAGCAUUAAUCUAUAUAUUGAAUAUAUGAAUAUUUUUCAGUCACAUAAUUUUGAGGCACAUAUUUCUCUGUUUUUCAUAGUAGAACAAAGCAAUCUGUUAUGGCAUUAAUGUAUUUUUCACAUACAUUAACCAUGUACUUCUCGAACAAAAGCUUCAACAAUAUUUACUAGGGAGCACAACAUUUCUCUGUUUUUCACAGUAUCGACAAAACAUUCAAGUAAUAUAAUAGAUUGCUUCUGACAGACAUUUAAGAUAAUGUGUAAUUGCACAUUGUUUGUAAUGCACGGCUAAACAGCUAAAAUAACAAACAGAUUGUUUGCUAGAGGAAGGAGAUAUACACAGUAGCACAGAAUAUGCAACAAAUAUUAUAGGGAGCUGUUUAAAUGACCAGAGAGUACCAAAAUGCAUACUGACACAGUACCAAAAUACAUGUUCAGGCUUACUGACAUGGUGCAUCAGAGGGAUGUUGGGCUUGGCCCACUUGGACAAUUGGGCCAUAUUCUCAUGUUUGGGCCAAAGGGUAUUUUUGUCAUUUCAGUAAAAAAACUGACAAGUGAUUACAUCCUAUCAACAGUCAACUACCAGUCAACGGACGGCAAUGGCAUGAGAGGGAGCGAAAAUUUGAACCAAUGGCAUAUAAGGGAAGAGCCAAUUUUCAGUGGCAUUCAAGGGAUCAGACAAAUUUUCAGUGGCAUAUAAGGGAUUUUCCCAAAAUUUAAUGAUGUCAUACAAAUUAAAGCACAAACAAAAAAUCUAGAACAACAAGUAUUUCCAGAUAUUGUAUUUUUCAUUGAUAACAAUUAUGAUUUGUAGUUUCUUUGGAUUGCCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

355

LEP:

72.15%

ME_num:

133

MEP:

27.03%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.95

Avg Expression:

9.21

Tip: OSA-LNC112937805 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.616600642039190.016123906973901
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN3.552569424134830.000553105147287277
3BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs1.288300466492880.00405681831296156