Chr:
Chr1
Start:
28962677
End:
28964409
Strand:
+
Ref_name:
LOC112937665
Sequence
(XR_003240329.1):
UCUUCCAUAGCGCAAAAUUAAAAAGAGAGUCCGGCCGUGAAACGGGACACUGUUUUUAUGAUGUUCAUUCCAAUGUUCCAACCUUGAUAAAUAAGACGCUGGAGGGAGAACGUGUGGCACUUCUAGAGCAGUGCAGGUGACGAUCAGAAGGACACCGCUACCCCGCUGACUGCCGACAAUCUAUCUAGACUCAAGCUAGCGAUGCCAAUUGUUCUUCUACACAGACAAUAUGAGAGGUGGUUCAAGGUGCGUCUGCAACCUCUACUUCCACUUUGAUUUAGGAGGCUACAUCAACAUCCAUGGCUUCGAGGAAACGGUCCGAUCUGAUCCAUUCUCUGUGAUGAUACGUGCAACAUGGAACGUAGACGGAUGAGCAGAAGCUGCACGCUACUACACCAUUUCCCUAUCCUUUUCAAACUUCAAGGACAUCUUGAAUCUUCUUAUUCUUCUUCCCUCCCUCCCUCCCCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUUCUCUUCUUUUUGCACAACCCAUUGUUAAUUUGAAAUUGAAUACUGUAAUACUCAAUUUGUUUUGGAAAUUAAUUUGUACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.11%
ME_num:
MEP:
5.08%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.95
Avg Expression:
2.50
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | 9L136 // leaf // control--/--9L136 // leaf // salt | 5.49817503603502 | 0.00193965113724667 |
2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.81449626368518 | 0.0250143084819349 |