Chr:
Chr1
Start:
14952050
End:
14953229
Strand:
+
Ref_name:
LOC112937651
Sequence
(XR_003240319.1):
CCGGAGAAAAUUAGAAGGAGAAGAAAAGAAGCAGAGAGAGGCGCACAAAAACAAAUCACAUAACAAAUCACAUUGAUCUAUCUGCUGGUGGUGUUCCGAGGAGAUUAGAAACUUCCCAGUGCUGGUGGUGUUCCGAGAAGAUUAGAAACUUCCCAGUGACUCGCCUGCGGUUCGUGAGCAAGUACGCCACAGUGAGAUUAAAUAUCUCUCGUCAUCGAGCCGAUGUCGCAAGUGGAGAUGAUGGUGGUAGAUGGAGCGAGCCCUAAAUUAUAAACAAAGGAGGAGUGGAGAUAAAAAAAAGAUAUAUGCUAUGUACGUGACCGACGAGGCCAAGCAAUGCAUUGGCUAAAGCUGAAAAAUGCUAUGGUUGUUAUAUAUGUCUAUUUAUAGGCGAAACCAUGGCCGAGUGCUGACAAGGCCAGGUCAAUAUACUAUUAACACGCCUAAAAUAGACAGGAGCCGGAUACACCGUUGCUGGGCACCGACGAGGCAAAAGCAACCACAAAAAUCCAUGUUUGAUGAAGGCCGGGAUACAUGACUGGGCACCGAUGAGGCAAAAGUCACCCGCUUCACCAAAUUCCCUCCGCACGCGGACGUGAUGGUAGUGUACUAUGACCGUGUUUUGGUGAAACAAAGCCACCCGUUACACAUUCAUUAUAUUCACCGUUAAACCUGCACCAACCUCAACCUUCGGCGAGCAAAUAAUUUUGAAGACGACGAUCACAAAGCGCAGCUUAAUCGGAGGUAUUCCAUAGGCUCGUCCUGUGGAUGUAAUUAACCGGUAGCCUCAUUGCUAGGCGCCGGGAAUCAGCAGACUGCACGCAAUCUCUAGUCAGCAUAUCUUUCCAUUAAGCAUUCCUCGCGAAGGCAAAAGGCGAACUCCUGCGGGAGCCCUCAUGUAUUUGUAAACAUUCAUAUUAAUGAAUCAUGAUUAAUAAAAUACAAGGUUUCUCUAUUUUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.92%
ME_num:
MEP:
4.27%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
1.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 5.91540881869788 | 0.00126928218416666 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 6.40639274905754 | 0.000107483389499393 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 5.79816548878075 | 0.00366651420320245 |