RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937631

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

42349555

End:

42351328

Strand:

+

Ref_name:

LOC112937631

Sequence
(XR_003240288.1):

UCGACAGUAGAGCGGGCGUUUCAGUGCGGAUGGGCUAGGCCCAUACUGUCCUCGGGCCGAGGAAAGCAAUCCCAUCCACCCAAACCAGCUAGGGUCGGGGCUGCUCCAAGUCGGCUGCCGCGGCAUGUCAGCCCACGCGCCGGCGAUCGAUGAGGGUCUCCUCCACAGGUACUCUCAUGAGUGCGGCGAUGGUGGCGGCGGCAUGGACAAUACCGUACGAGGAGUGAGAGACCCGGCAGAUGUCGUGGAGUGGAAAGCCAAGUACGAGAAGACCUACAAAGACGUCGGCGAGGAGGGGUGCCGGUACUUUUUUACUUUUGGUAUAUAGGUUUGCCGGUGCAUUGUCACGGAACUAAGGGCCUCAUCUUUUCGCUUAUACUUAUGCUUAUCAAUCAAAUUUUGAAUUUUCAACUUUGAAUUUGAAGCUCAUUUUGAGGGUUUUUUCAUCGAAAUUUAUUUUUCAGCCUUUGCAUUUAGAUCAUUAAGAACACCUAUAUAAAAGUUUUAUUCACAAAAUACUAUUCGUUUGUAAAUAUGACGUAUCGCUUAUUCCACGAAUAAGCGAAAAGGUGGGUCUCUGAAACAAAGUAGAGAGAGUCUGGAGGUAGCGCCAUCCCUGGAGAUGAAGCAAACAUGUGGGUACUCACUUGUGUUUUUUGCCGGAGAAUUUUACAACAAAUAAAAAUGUUGCUAAUGUAAUAUGGUAAAUUUUAGAUGAGAAUGUAAUCAUUUCCAACCUAUGAUAAAGAAAGAUUGUCUUCUCAUGUGUGUGUGUUUUCGGCUAUUUUGCUUUGUCCAAUUGGUCAAACGUCCCGUUACCGGGAAAAAUAUGUUGCGUACCAUAUAUGUACCGUUCGAUUGGAAAAUAGACGUCUGAGAUUCGUUCACGUCACCAUGAGUAAAAAUUAGAGGCCCUAAAAAUUAAGGACCAAAAACUAGGGAGUAGAAAUUGAAAAGAUGAAGUAAAUAACACAAUCAGCUGCUAAAAUAGAUUACAACGAGCUGAGCACGUAACGUAGCUGAUCCAUUCAGAUCGACCUCCAUUACGAGUUUCAGAAUAAGAUGACUGGUACCGUGUGUUUCUCCCAUUGUUUCACACUUUUAUAUCCCUGCAAUUAGAACAGGUCGAUUGCAGUCACAGGGAAUUUGAUCUGCAAGACAAAAGGAAAGGAUGUAUUGGUACUUCACUACUUGAAAUCGUCCCAAUUAGGAUUGUCUCUGAAGAUCAACAAUGCAGCAGCAAAGCCAUCUCCGCAACUGCCUUCGGUAAGUUCUUUGGGCCAAGCAUCACAGGUCAGCUUAUUCCUAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

392

LEP:

79.67%

ME_num:

99

MEP:

20.12%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.75

Avg Expression:

0.83

Tip: OSA-LNC112937631 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.870446309051890.0176965288368502
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"5.929517406677910.0277092088092225