Chr:
Chr1
Start:
40817835
End:
40819845
Strand:
+
Ref_name:
LOC112937621
Sequence
(XR_003240267.1):
UCUUAUUUAAAAAUUUAUGAAAAAAAAUUAAAUCACGCAUUAUCUAAUAGCAACAAAAAAUAUUAAUCAUAAAAAAAUUUAAAUAAAAUGAAUAGUUAAAUAUUGGACACGGAAACCUAUAACUACAGACGGAGGGGUACUAGUCUAAUAUACUGCGGGUAUAAAGUUUCUUUCAUAGGAACAGUACUGCUAUCGUUUUAGUUUGUGAGAUGCUGCAGCGAAGGUUGGGUUGUCAACAGCUAAGCCGCGACGUUUCGUACUGGCUUUGACCAAACCCCGCACAUGGGCUUGACCAAUUAAAUUUUGUCGCAAACGAUCGGAAAAAAAAAAUUCAGUUCGUUCGUGUGUGCGUGCGAUUGUGCUCGCGUGCACUCUUCGCUUGGUCGGCCUCCUCCUGGAGUCCCCGGUUGCUGUCGCCAUUAUAUACUCCUAUCUCUCUCCUUACUUCUUCAUCUAAUCAUCUCCAAUUCCUCGAGCCUUUUUUAUUCUUCUAUUAUGCAGGCUGGAAUUGAAACGAGGGUUUCUCCAAGAGGAUAGGUUAUCCAUCACAAUUAAGUGUGGAAAUUGACUGGCUAGUGAUUGAUGUUAUCCCUCAACUAAGCGUUUUUAGUGUAUGGUACUAUGUGUUGUUUCUCUGGGCCUAGUGGGCGAGUCUUCCUCGUGUUCGUAACGGUGCUGGGAGUGAACUGCUGCGCAAGUCAGUUACUCGGAGAAACAUCACCACGGCUGACACACACCUCUAUGGACUACGGACGUAUAGAGCGGUGAAUACGACCCCUAAUAGAUGCUCAAGAAGACGAUGACUAACGACAUAUUCUUGAUCUCACUAAAUUGUUAUUGAAUGUUCAAACUUAAAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.3%
ME_num:
MEP:
17.89%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.98
Avg Expression:
6.66
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.93527340081004 | 0.00192779810917322 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.41509890016489 | 1.33306765830192e-08 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.01812774932031 | 0.0382176183849781 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 4.68458014886817 | 0.0448662413108164 |