Chr:
Chr1
Start:
39978701
End:
39980338
Strand:
-
Ref_name:
LOC112937616
Sequence
(XR_003240262.1):
CCGGCCCAGCGCAGCCCAUUUCUGCUCAUCGUCCCCUUCCUUGAGCCAGCCAGUGCAUGCACACAAGGUGUUCGACGAAAUACCGACCCGAGUCGCUGCACCGUUCCGCCCUCGUUCCCGUACCGCGUUGCACCAUACCACCCUCCCGUGCGCCCCACAACGUGCCAGGGCCACGUAGCGCCGCCCCGCACGCCGCGCCAAAGCCGCAUCGCGCCAAACUCCACGAAAACCGCCGCGCCCUCUCCGGGAGACACGGAGCCACGUCGCCCCGCGUCACCCCCGUCUCGUCGCCGUUCCAUCCCGAGCUCUCGCGGACGCGCGUCCCUUCGCUGUCGCCCGUCGUCUUGUCGUCUGUCUCCUCCCGGGAAGCCGCCGAGCUCGCGCCUCCCUCUCACUCGCGUUCCAUCGCCACCACCGUGUGACGUCGCUCGCGUCGCAUCAAUCUGAGAACCCUACCACCCAAAUCCCGGCCGUAGCCGCCGUCGGCCGCGCGUCAUCGAUGUCCCGUCGCCUUUCCCACUCUCCGCGCGUCACUUCGUGUCGCGUCGCCGUCGUUUUCACCGUCGAGUCACCACCGGUGCAUGACGCCAAGCCAUCGCGUCGCCAUCUCGUCCACCCCGGAAUCCCGCCCUAGCCGCUAGCCAGCUACCCCCGGAGCUCCGCGUCUAGACCGCCAGCUCGCCACCGCGCCGCUUGCCUAUAAAAGGGGAAGCAGCCCGAGCUCCUUCUCCCCACACCAUCACCAUCUCUCCCCAUCUCUCUCUCCUCUCUCUUUCUCUCGUUUUGCUCUCUGUUGCUGCCAGCCAGAGCCGCCGCGCUAUUCUCCCGGCGCCGCCGUCGCCGGUGGAGCCUCGCCGGAGUUCUCCGCCGCCCUCCCUCAGCCGCCGGUCGCCUCGCCGCACCCCAUCGCCGAAACGCAUCGCUAUCCCAGACCGAGCCGAGCAAAAGAGCGAGAGGAGGAAGAAGCAGGCCUCCUCAAGCCUCUGCCAAGCCGGCCCCACCUUCCUUUAUUCCUUCCUGCCACUAACGAGCAGGGCCCGUGUGCCUUUUCCUCUCUAGCAGCCACCGACAGAGCCCGAGUUCGAGGAAGCUCCGGACGCCGCUUUCGAAGGAGAAGACCCCAACGCUGUGCAAGGCAAGCCCCUUUGAUCACAUUGCCCCUAUAUUUUCAAUGAUAUGUUGUUUGCAAAGAUGCAUUGUUAGUUCACACGAUUAACAUGUUUAGGCCUCGGAUUGUUUAUACAACCGACGGACCAACCCAGUAGUCGCACUUAUAUUACAUAGGUUGAUGUUUCCAUACCAUUGAUAGCUCCACAAAUAUUUGCGCCGGUAUCAUUAUUCGUUUACCGAGGUAGUUUCGCUUAGCCAUGCUUACGUUGUUGCCGUGUGGGAAACUUGGGUUAUUCCAAAUCCAUGUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.0%
ME_num:
MEP:
19.51%
HE_num:
HEP:
5.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.80
Avg Expression:
2.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -8.87377929130737 | 1.52018249629421e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.79464351687678 | 1.45711604793804e-15 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.26820387358619 | 3.19534270140765e-15 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.28580323784931 | 2.34291548284295e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -7.4107057100407 | 4.21138767799242e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.68515082014765 | 1.42783856954058e-09 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.47191617642637 | 2.58491308581365e-21 |
| 8 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.65400755259672 | 0.000520318034832426 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.77437617330631 | 9.10742845335733e-16 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.55628768739432 | 0.00396777414450865 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -7.97445212448502 | 1.11657056935462e-10 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.23664855286616 | 4.64152657542146e-18 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.66710288363699 | 1.43653766562644e-14 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.10265228815611 | 6.8101221006801e-13 |